Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   V1M48_RS12805 Genome accession   NZ_CP143559
Coordinates   589165..589683 (+) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain WHSS0915     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 584165..594683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1M48_RS12795 (V1M48_12795) gshA 586885..588453 (+) 1569 WP_029790338.1 glutamate--cysteine ligase -
  V1M48_RS12800 (V1M48_12800) - 588473..589078 (+) 606 WP_029790340.1 hypothetical protein -
  V1M48_RS12805 (V1M48_12805) luxS 589165..589683 (+) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  V1M48_RS12810 (V1M48_12810) - 589776..591050 (-) 1275 WP_005446238.1 HlyC/CorC family transporter -
  V1M48_RS12815 (V1M48_12815) - 591205..591999 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  V1M48_RS12820 (V1M48_12820) ffh 592213..593595 (+) 1383 WP_005446242.1 signal recognition particle protein -
  V1M48_RS12825 (V1M48_12825) rpsP 593806..594054 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  V1M48_RS12830 (V1M48_12830) rimM 594083..594631 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=929681 V1M48_RS12805 WP_005448429.1 589165..589683(+) (luxS) [Vibrio harveyi strain WHSS0915]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=929681 V1M48_RS12805 WP_005448429.1 589165..589683(+) (luxS) [Vibrio harveyi strain WHSS0915]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855