Detailed information NTG0929678

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: V1M48_RS12675
• Genome accession: NZ_CP143559
• Coordinates: 566434..567417 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain WHSS0915
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 561434..572417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V1M48_RS12640 (V1M48_12640)	ftsB	561440..561721 (+)	282	WP_005452106.1	cell division protein FtsB	-
V1M48_RS12645 (V1M48_12645)	ispD	561723..562433 (+)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
V1M48_RS12650 (V1M48_12650)	ispF	562448..562924 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
V1M48_RS12655 (V1M48_12655)	truD	562970..564013 (+)	1044	WP_330472425.1	tRNA pseudouridine(13) synthase TruD	-
V1M48_RS12660 (V1M48_12660)	surE	564013..564789 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
V1M48_RS12665 (V1M48_12665)	-	564789..565415 (+)	627	WP_101960243.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
V1M48_RS12670 (V1M48_12670)	-	565430..566353 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
V1M48_RS12675 (V1M48_12675)	rpoS	566434..567417 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
V1M48_RS12680 (V1M48_12680)	mutS	567511..570072 (-)	2562	WP_330472426.1	DNA mismatch repair protein MutS	-
V1M48_RS12685 (V1M48_12685)	pncC	570158..570640 (+)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
V1M48_RS12690 (V1M48_12690)	recA	570842..571885 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=929678 V1M48_RS12675 WP_005452115.1 566434..567417(+) (rpoS) [Vibrio harveyi strain WHSS0915]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=929678 V1M48_RS12675 WP_005452115.1 566434..567417(+) (rpoS) [Vibrio harveyi strain WHSS0915]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCAGATACAGCAATCGAGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGCCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856