Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   V1M48_RS03885 Genome accession   NZ_CP143558
Coordinates   861928..863109 (-) Length   393 a.a.
NCBI ID   WP_005447136.1    Uniprot ID   -
Organism   Vibrio harveyi strain WHSS0915     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 856928..868109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1M48_RS03870 (V1M48_03870) - 858222..858770 (+) 549 WP_005447141.1 GNAT family N-acetyltransferase -
  V1M48_RS03875 (V1M48_03875) - 858845..859462 (-) 618 WP_017188910.1 HAD family hydrolase -
  V1M48_RS03880 (V1M48_03880) - 859749..861794 (+) 2046 WP_330472005.1 hybrid sensor histidine kinase/response regulator -
  V1M48_RS03885 (V1M48_03885) cqsA 861928..863109 (-) 1182 WP_005447136.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  V1M48_RS03890 (V1M48_03890) ylqF 863643..864587 (-) 945 WP_005447133.1 ribosome biogenesis GTPase YlqF -
  V1M48_RS03895 (V1M48_03895) - 864916..865404 (-) 489 WP_017819190.1 type II secretion system protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43703.81 Da        Isoelectric Point: 6.5000

>NTDB_id=929663 V1M48_RS03885 WP_005447136.1 861928..863109(-) (cqsA) [Vibrio harveyi strain WHSS0915]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPHSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=929663 V1M48_RS03885 WP_005447136.1 861928..863109(-) (cqsA) [Vibrio harveyi strain WHSS0915]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTGGGTAAGCGACCGCACTCCGGAGCGGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGTATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCAGTTTATAGCACGATTGGTACTATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCGGGTCTTGTAAAAGCGTTGGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAGAAGCTGGCTAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGTTCGACGGTGTTGCCACAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGGGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGAAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567