Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V1500_RS21890 Genome accession   NZ_CP143547
Coordinates   4452881..4453831 (-) Length   316 a.a.
NCBI ID   WP_409302586.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4447881..4458831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS21865 (V1500_21865) - 4449509..4449850 (+) 342 WP_409302577.1 DMT family transporter -
  V1500_RS21870 (V1500_21870) - 4449850..4450164 (+) 315 WP_409302578.1 DMT family transporter -
  V1500_RS21875 (V1500_21875) - 4450204..4451148 (-) 945 WP_409302580.1 siderophore ABC transporter substrate-binding protein -
  V1500_RS21880 (V1500_21880) - 4451186..4451944 (-) 759 WP_409302582.1 ABC transporter ATP-binding protein -
  V1500_RS21885 (V1500_21885) - 4451938..4452888 (-) 951 WP_409302584.1 iron chelate uptake ABC transporter family permease subunit -
  V1500_RS21890 (V1500_21890) ceuB 4452881..4453831 (-) 951 WP_409302586.1 ABC transporter permease Machinery gene
  V1500_RS21895 (V1500_21895) - 4454227..4454763 (+) 537 WP_409302588.1 YceI family protein -
  V1500_RS21900 (V1500_21900) - 4454839..4455378 (-) 540 WP_409302590.1 NADPH-dependent FMN reductase -
  V1500_RS21905 (V1500_21905) - 4455733..4456005 (+) 273 WP_409302592.1 DUF1450 domain-containing protein -
  V1500_RS21910 (V1500_21910) - 4456503..4457174 (-) 672 WP_409302594.1 class D sortase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34893.22 Da        Isoelectric Point: 10.0840

>NTDB_id=929623 V1500_RS21890 WP_409302586.1 4452881..4453831(-) (ceuB) [Peribacillus sp. SCS-155]
MKKRYLIIAFVVLSLASLFIGVKDITPLDLLHMTKDQRDILFISRFPRLISLIIAGVSMSICGLIMQQLSRNKFVSPSTA
GTMDSARLGILVSLILFSSASMMEKMLIASVFALAGTFLFMRLLDRIKFKDAIFIPLVGLMFGNIISSITTFFAYKHDLI
QSISAWLHGDFSMIMAGRYEMIYISIPLVIVAYLFANKFTIAGMGEEFAVNLGLNYRVVVNTGLIIVALSTTAVLLTVGM
IPFLGLVVPNIVSIYNGDNLKKNLTHTALLGAVFLLFCDILGRVIIFPYEMPIGLTVGVIGSGIFLYLLMRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=929623 V1500_RS21890 WP_409302586.1 4452881..4453831(-) (ceuB) [Peribacillus sp. SCS-155]
ATGAAAAAGAGATACTTAATTATCGCATTCGTAGTACTTTCTCTGGCCTCATTGTTCATAGGTGTAAAGGATATTACTCC
ACTCGATTTACTACATATGACTAAAGACCAGAGGGATATTCTTTTTATCAGCAGATTCCCCCGGTTAATCAGCCTGATTA
TTGCCGGAGTCAGCATGAGCATCTGTGGACTTATCATGCAGCAGCTAAGCAGGAATAAGTTCGTATCTCCAAGCACGGCT
GGGACCATGGACTCCGCAAGACTGGGGATTCTTGTTTCATTAATTCTCTTCTCATCGGCCAGCATGATGGAGAAGATGCT
GATTGCTTCTGTGTTTGCGCTTGCCGGTACGTTTCTGTTCATGAGGCTTCTTGATAGAATCAAGTTCAAAGATGCGATAT
TCATTCCTCTTGTAGGGTTGATGTTTGGAAATATCATTAGTTCCATTACAACATTCTTCGCATACAAACACGATTTGATT
CAAAGTATATCTGCTTGGCTGCATGGCGATTTTTCCATGATTATGGCCGGAAGATATGAAATGATCTATATAAGCATCCC
GCTGGTAATTGTGGCTTATTTATTTGCCAACAAATTCACTATTGCAGGAATGGGAGAAGAATTTGCTGTCAATTTAGGCT
TGAATTATAGGGTTGTAGTCAATACAGGCCTGATCATTGTCGCTTTATCCACTACGGCTGTCTTGCTTACTGTAGGGATG
ATTCCATTTTTAGGGCTGGTTGTCCCCAATATAGTCTCTATTTATAATGGCGACAATTTAAAGAAAAATCTGACTCATAC
AGCTCTCCTGGGAGCAGTGTTCCTGCTGTTTTGTGATATTTTGGGAAGAGTCATTATTTTCCCATATGAAATGCCGATCG
GGTTAACAGTAGGGGTAATTGGAAGCGGGATCTTTCTTTATCTGCTGATGAGGAGAAAAGCATATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.272

99.051

0.547