Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V1500_RS18690 Genome accession   NZ_CP143547
Coordinates   3805490..3807208 (-) Length   572 a.a.
NCBI ID   WP_409301580.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3800490..3812208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS18670 (V1500_18670) - 3801292..3801522 (+) 231 WP_409301573.1 DUF2627 domain-containing protein -
  V1500_RS18675 (V1500_18675) - 3801585..3802313 (-) 729 WP_409301575.1 glycerophosphodiester phosphodiesterase -
  V1500_RS18680 (V1500_18680) spo0A 3803011..3803805 (-) 795 WP_409301576.1 sporulation transcription factor Spo0A -
  V1500_RS18685 (V1500_18685) spoIVB 3804068..3805369 (-) 1302 WP_409301578.1 SpoIVB peptidase -
  V1500_RS18690 (V1500_18690) recN 3805490..3807208 (-) 1719 WP_409301580.1 DNA repair protein RecN Machinery gene
  V1500_RS18695 (V1500_18695) ahrC 3807230..3807679 (-) 450 WP_409301582.1 transcriptional regulator AhrC/ArgR -
  V1500_RS18700 (V1500_18700) - 3807917..3808777 (-) 861 WP_409301584.1 TlyA family RNA methyltransferase -
  V1500_RS18705 (V1500_18705) dxs 3808782..3810674 (-) 1893 WP_409301586.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V1500_RS18710 (V1500_18710) - 3811215..3812108 (-) 894 WP_409301588.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64595.63 Da        Isoelectric Point: 4.9632

>NTDB_id=929611 V1500_RS18690 WP_409301580.1 3805490..3807208(-) (recN) [Peribacillus sp. SCS-155]
MLTELSIKNFAIIEALSISFDKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEAKAEIEGLFQLDDDSHPVVSK
AEEFGIEISDNMIVLRRDMASSGKSVCRVNGKLVTISVLREIGRTLIDIHGQHEHQELMDERLHLQLLDQFGGETVSSAL
LEYQNLYKRYDTAVKQLKKLSQNEQQMVHRLDLLQFQHEEIQKADLKLKEDEELTEERKRINNFEKIYDSLQAAYEALRG
EQHGMDWLSVAMNNLDTAAGIDENLKSVSETVSNSYYLLEDVIASIRTELDSLEYDPVRLDFIEGRLNEINQLKRKYGKT
IDEIVEYGAQIEEEIETLLNRETHIAKLDKEISEIKEDLMLEAKNLSELRRKFADRLTDQIHQELKELYMEKTVFEVRFL
TSAFDDLAEADIQRTGLDVIEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQS
IAEKIYKVAVDSQVLCISHLPQVAAMADTHLFIAKEIEGGRTRTSVEPLDQTNKVKEIGRMISGVEITDLTKKHAKELLQ
QAKKLKKVKSGR

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=929611 V1500_RS18690 WP_409301580.1 3805490..3807208(-) (recN) [Peribacillus sp. SCS-155]
TTGTTAACTGAATTATCTATAAAGAACTTTGCAATTATTGAAGCCCTTTCGATTTCTTTTGATAAGGGCTTAACTGTATT
AACCGGGGAAACTGGAGCAGGTAAATCCATCATTATTGACGCGATCCATCTTCTTGTTGGTGGAAGAGGCTCGGCCGAGT
TTGTAAGGCATGGGGAAGCAAAGGCTGAAATAGAAGGACTCTTTCAGCTTGATGATGACTCACATCCTGTCGTTTCCAAA
GCTGAAGAATTTGGGATTGAGATCAGTGACAATATGATTGTCCTCAGACGGGATATGGCGAGCAGCGGCAAGAGCGTATG
CAGGGTCAATGGAAAGCTTGTTACGATTTCTGTTCTTAGGGAAATTGGAAGGACACTGATAGATATTCATGGCCAGCATG
AGCATCAGGAATTGATGGACGAGAGGCTCCATCTCCAGCTGCTGGACCAATTCGGTGGAGAAACAGTTTCATCTGCCCTG
CTTGAATATCAAAATCTGTATAAGCGTTATGATACAGCGGTTAAACAGCTAAAAAAACTAAGTCAGAATGAGCAGCAAAT
GGTTCATCGCCTTGATTTGCTACAGTTTCAGCATGAGGAGATTCAGAAGGCCGATCTCAAGCTCAAAGAGGATGAAGAGT
TGACTGAAGAGAGGAAGCGCATTAATAATTTCGAAAAAATTTATGATTCCCTGCAGGCTGCTTATGAAGCATTAAGGGGA
GAACAGCACGGAATGGACTGGCTTTCAGTGGCGATGAATAATCTGGATACTGCTGCAGGGATTGATGAAAACCTGAAATC
GGTGTCTGAAACAGTCTCCAATAGCTATTATCTCCTGGAAGATGTCATAGCATCCATTAGAACGGAACTCGATTCCCTTG
AGTATGATCCGGTACGCCTGGATTTTATTGAGGGCAGACTGAATGAAATCAATCAATTAAAACGAAAATATGGGAAAACG
ATCGATGAAATAGTGGAATATGGGGCACAAATCGAGGAAGAAATCGAAACACTTTTAAATAGAGAAACCCATATCGCAAA
GCTGGATAAGGAAATTAGCGAGATAAAGGAAGATTTAATGCTGGAAGCAAAGAATCTTTCTGAGCTGAGAAGAAAATTTG
CTGACCGGCTGACCGATCAGATTCATCAGGAACTTAAAGAGTTATATATGGAGAAGACCGTTTTTGAGGTTCGCTTCCTT
ACATCGGCATTTGATGATCTTGCAGAAGCCGATATCCAGCGCACAGGCCTGGATGTGATTGAATTCTACATCTCGACCAA
CCCCGGTGAACCTCTGAAGCCCCTTTCCAAAATTGCTTCAGGAGGGGAACTGTCACGGATCATGCTAGCGTTAAAAAGCA
TCTTTTCCAAGCATCAAGGTATTACCTCCATCATTTTCGACGAAGTCGATACCGGGGTAAGCGGGAGAGTTGCGCAATCT
ATTGCAGAAAAAATTTACAAGGTAGCGGTAGACTCCCAGGTACTTTGCATTTCTCATCTTCCACAGGTTGCGGCAATGGC
GGATACTCATTTATTTATTGCAAAGGAGATAGAGGGCGGCCGAACGAGAACGTCAGTAGAGCCGCTTGACCAGACCAATA
AGGTTAAAGAAATCGGACGGATGATTTCAGGCGTTGAGATTACCGATCTTACCAAAAAGCACGCAAAAGAACTGCTGCAG
CAGGCAAAAAAATTGAAGAAGGTTAAATCAGGCAGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.24

100

0.635