Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V1500_RS05960 Genome accession   NZ_CP143547
Coordinates   1174483..1176297 (+) Length   604 a.a.
NCBI ID   WP_409304667.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169483..1181297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS05940 (V1500_05940) mecA 1169976..1170647 (+) 672 WP_409304663.1 adaptor protein MecA -
  V1500_RS05945 (V1500_05945) cls 1170958..1172463 (+) 1506 WP_409304664.1 cardiolipin synthase -
  V1500_RS05950 (V1500_05950) - 1172836..1173045 (+) 210 WP_409304665.1 hypothetical protein -
  V1500_RS05955 (V1500_05955) - 1173198..1174388 (+) 1191 WP_409304666.1 competence protein CoiA -
  V1500_RS05960 (V1500_05960) pepF 1174483..1176297 (+) 1815 WP_409304667.1 oligoendopeptidase F Regulator
  V1500_RS05965 (V1500_05965) - 1176946..1177848 (-) 903 WP_409304668.1 ClpXP adapter SpxH family protein -
  V1500_RS05970 (V1500_05970) - 1177845..1178249 (-) 405 WP_409304669.1 globin -
  V1500_RS05975 (V1500_05975) - 1178489..1179193 (-) 705 WP_409304670.1 lytic transglycosylase domain-containing protein -
  V1500_RS05980 (V1500_05980) - 1179219..1179797 (-) 579 WP_409304671.1 CYTH domain-containing protein -
  V1500_RS05985 (V1500_05985) - 1179926..1180288 (+) 363 WP_409304672.1 hypothetical protein -
  V1500_RS05990 (V1500_05990) - 1180321..1180956 (+) 636 WP_409304673.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69613.67 Da        Isoelectric Point: 4.5943

>NTDB_id=929602 V1500_RS05960 WP_409304667.1 1174483..1176297(+) (pepF) [Peribacillus sp. SCS-155]
MSQETTIKTLPARSEIAAEDTWRLEDIFATEEDWEAEFKGIKEDLAKSETFQGTLGESAEKLFAALEFQYEIFERLGRVY
TYAHMRYDQDTTNSFYQGMDDRARSLYSQASSAFSYMTPEILSIDENTIQQFVEEKEELSLYKQVLEEISKQRPHVLSAE
QESLLAQASEALDASSNTFGMLNNADLQFPTIKDEEGNDVEITHGRYIRFLESEDRRVREDAFKGVYSTYGKFRNTFSST
LSGAVKSHNFNATVRKYDSARHAALSANNIPESVYDNLVNTVNENLHLLHRYVDLRKRVLELDELHMYDLFTPLVKEVKM
QISYEEAQDLILKGLAPLGDEYLNVLKEGFESRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGGYSIFVAEVASTCNENLLNDYLLNTIEDEKKRIYLLNHYLEGFRGTVFRQTMFAEFEHTIHKKAQ
EGEALTSEMLTKEYYELNKKYFGENIAVDEEIGLEWARIPHFYYNYYVYQYATGMSAATALSKQILEEGQPAVERYIEFL
KAGSSDYPIEVLKKAGVDMTQAEPIREALKVFEEKLSELEALLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=929602 V1500_RS05960 WP_409304667.1 1174483..1176297(+) (pepF) [Peribacillus sp. SCS-155]
ATGTCACAAGAAACAACGATTAAAACACTGCCTGCAAGAAGTGAAATTGCAGCGGAAGATACATGGAGATTGGAAGATAT
ATTTGCTACCGAAGAAGATTGGGAAGCCGAGTTCAAAGGGATAAAAGAGGATCTTGCGAAATCAGAGACCTTTCAGGGTA
CACTGGGTGAAAGCGCTGAAAAGTTATTTGCTGCCCTCGAATTTCAATATGAGATTTTCGAAAGATTAGGCAGGGTATAT
ACATACGCTCATATGCGTTATGATCAGGATACTACCAACTCCTTCTACCAGGGAATGGATGATCGTGCACGAAGCTTGTA
TTCCCAGGCGTCCAGTGCATTTTCCTATATGACTCCTGAAATTTTAAGCATTGACGAGAACACGATACAGCAATTCGTTG
AGGAAAAAGAAGAACTGAGCTTGTATAAACAGGTGCTGGAGGAAATTTCAAAGCAGCGGCCGCATGTATTAAGTGCTGAA
CAGGAGTCCCTGCTGGCCCAGGCTTCAGAAGCGCTCGATGCTTCAAGCAATACGTTCGGCATGCTGAATAATGCGGATCT
TCAATTTCCTACGATCAAGGACGAGGAAGGAAACGACGTAGAAATCACACATGGCAGGTACATCCGCTTTTTGGAGAGTG
AAGACCGCCGTGTCCGGGAAGACGCATTCAAGGGAGTTTATTCAACATACGGCAAGTTCCGCAACACCTTTTCAAGTACA
TTATCCGGTGCGGTGAAAAGCCATAACTTTAACGCGACAGTGAGAAAGTATGATTCTGCAAGGCATGCTGCTCTTAGCGC
TAATAATATTCCGGAAAGTGTTTACGATAACCTTGTAAACACTGTAAATGAGAACCTTCATCTGCTTCATCGTTATGTAG
ACCTTCGCAAACGGGTATTAGAATTGGATGAATTGCATATGTACGACCTTTTCACCCCACTGGTAAAAGAAGTTAAAATG
CAAATTTCGTACGAGGAAGCGCAGGATCTAATCCTTAAGGGACTTGCACCACTAGGGGATGAGTACCTGAATGTACTTAA
GGAAGGCTTTGAAAGCCGCTGGGTAGATGTCCATGAAAACAAAGGAAAAAGAAGCGGAGCTTACTCTTCCGGGGCATATG
GGACAAATCCGTATATCCTTATGAATTGGCAGGACAATGTAAACAATCTATTCACACTGGCCCATGAATTCGGCCATTCC
GTGCATAGCTATTACACTAGAAAAACCCAGCCTTATCCATATGGCGGATATTCCATTTTTGTTGCCGAGGTTGCATCTAC
ATGCAATGAGAATCTGTTAAACGATTATTTGCTTAACACGATCGAGGACGAGAAGAAGAGGATCTATCTGTTAAATCACT
ATTTAGAAGGTTTCCGTGGAACAGTATTCCGGCAGACAATGTTCGCCGAGTTTGAGCATACGATTCATAAAAAGGCACAA
GAGGGCGAAGCATTGACTTCTGAAATGCTGACAAAAGAGTACTATGAGCTTAATAAGAAGTATTTTGGAGAGAATATTGC
CGTAGATGAGGAAATCGGCCTTGAATGGGCTAGAATACCTCATTTCTATTACAACTACTATGTATACCAATATGCTACTG
GAATGAGCGCTGCAACGGCACTGAGCAAGCAAATTCTTGAAGAGGGCCAGCCAGCAGTGGAGCGTTATATAGAATTCCTT
AAGGCAGGCAGCTCAGATTATCCAATCGAGGTGCTGAAAAAAGCAGGAGTGGATATGACTCAGGCGGAGCCGATAAGAGA
AGCCTTGAAAGTGTTCGAGGAAAAGCTATCAGAACTTGAGGCACTACTCGGCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

97.848

0.498