Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   V1500_RS04410 Genome accession   NZ_CP143547
Coordinates   879479..880285 (+) Length   268 a.a.
NCBI ID   WP_409304394.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 874479..885285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS04380 (V1500_04380) - 875077..876633 (+) 1557 WP_409304388.1 fatty acid--CoA ligase -
  V1500_RS04385 (V1500_04385) - 876825..877016 (+) 192 WP_409304389.1 hypothetical protein -
  V1500_RS04390 (V1500_04390) - 877523..877975 (+) 453 WP_409304390.1 Crp/Fnr family transcriptional regulator -
  V1500_RS04395 (V1500_04395) - 878018..878191 (-) 174 WP_409304391.1 YfhD family protein -
  V1500_RS04400 (V1500_04400) - 878284..878409 (-) 126 WP_409304392.1 YfhE family protein -
  V1500_RS04405 (V1500_04405) - 878493..879410 (-) 918 WP_409304393.1 TIGR01777 family oxidoreductase -
  V1500_RS04410 (V1500_04410) recX 879479..880285 (+) 807 WP_409304394.1 recombination regulator RecX Regulator
  V1500_RS04415 (V1500_04415) - 880282..880509 (-) 228 WP_409304395.1 hypothetical protein -
  V1500_RS04420 (V1500_04420) - 880678..881016 (+) 339 WP_409304396.1 YfhH family protein -
  V1500_RS04425 (V1500_04425) - 881049..881210 (-) 162 WP_409304397.1 small, acid-soluble spore protein K -
  V1500_RS04430 (V1500_04430) - 881332..881598 (+) 267 WP_409304398.1 YfhJ family protein -
  V1500_RS04435 (V1500_04435) - 881659..882639 (-) 981 WP_409304399.1 metal-dependent hydrolase -
  V1500_RS04440 (V1500_04440) mutY 882802..883875 (+) 1074 WP_409305912.1 A/G-specific adenine glycosylase -
  V1500_RS04445 (V1500_04445) - 883904..884128 (-) 225 WP_409304400.1 hypothetical protein -
  V1500_RS04450 (V1500_04450) fabL 884221..884970 (+) 750 WP_409304401.1 enoyl-[acyl-carrier-protein] reductase FabL -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31674.23 Da        Isoelectric Point: 6.9294

>NTDB_id=929592 V1500_RS04410 WP_409304394.1 879479..880285(+) (recX) [Peribacillus sp. SCS-155]
MPQITKITTQKKRADRFNIFMDYGKGEEYAFSVDEDVLLKYQLKKGMELDELDLSEIQFHDDIQKTVSMALNYLSHRMRS
ENEVRTYLEQKEVEAPIIQEAIHKLYQYKYLDDLAFGEAFVRTHMNGGKKGPIILRRELKDKGLNDIQIEQALLQYPYDI
QVEHAKILAEKMIVKEKNTSANLLKQKIEQSLYRKGFSSDAIANAMQDIVIEKPEGDEWHALSIQAEKVSRRLNKYSDYE
YRHKMKQALFRKGFQIDLIERYLDRHEN

Nucleotide


Download         Length: 807 bp        

>NTDB_id=929592 V1500_RS04410 WP_409304394.1 879479..880285(+) (recX) [Peribacillus sp. SCS-155]
ATGCCGCAGATTACAAAAATAACAACCCAAAAAAAACGCGCAGACCGGTTTAATATATTTATGGATTACGGCAAAGGCGA
AGAGTATGCTTTTAGTGTCGATGAAGATGTACTTCTTAAATATCAGTTAAAAAAAGGCATGGAATTGGATGAATTGGATC
TAAGTGAAATACAATTCCATGATGACATTCAAAAAACTGTTTCTATGGCGCTAAACTATTTATCGCATAGAATGAGATCC
GAAAATGAAGTCAGGACGTACCTCGAACAAAAGGAAGTCGAGGCTCCCATTATCCAGGAAGCCATTCATAAGCTGTATCA
ATACAAATATCTCGATGATCTGGCTTTCGGGGAGGCCTTTGTACGTACACATATGAATGGCGGAAAAAAGGGCCCAATCA
TCTTAAGGCGTGAACTAAAGGATAAAGGGCTAAACGATATCCAAATCGAGCAAGCACTGTTGCAATACCCTTATGATATT
CAAGTAGAGCATGCCAAAATCCTTGCGGAAAAAATGATAGTAAAGGAAAAAAATACATCAGCAAATCTTCTGAAACAAAA
AATTGAACAGAGCTTATATAGAAAAGGCTTTTCTTCAGATGCCATTGCCAATGCCATGCAGGATATAGTTATAGAAAAAC
CTGAAGGAGATGAATGGCACGCTCTATCAATCCAGGCTGAGAAGGTTTCTCGCCGGCTAAACAAATATTCAGATTATGAA
TATCGGCATAAAATGAAGCAGGCATTGTTCCGTAAAGGGTTTCAAATAGATTTGATTGAACGTTATCTGGATAGACATGA
AAATTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(88-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

48.315

99.627

0.481