Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V1500_RS00560 Genome accession   NZ_CP143547
Coordinates   106661..108049 (+) Length   462 a.a.
NCBI ID   WP_409303701.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101661..113049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS00540 (V1500_00540) - 101814..102275 (+) 462 WP_409303693.1 CtsR family transcriptional regulator -
  V1500_RS00545 (V1500_00545) - 102297..102851 (+) 555 WP_409303695.1 UvrB/UvrC motif-containing protein -
  V1500_RS00550 (V1500_00550) - 102848..103942 (+) 1095 WP_409303697.1 protein arginine kinase -
  V1500_RS00555 (V1500_00555) clpC 103939..106380 (+) 2442 WP_409303699.1 ATP-dependent protease ATP-binding subunit ClpC -
  V1500_RS00560 (V1500_00560) radA 106661..108049 (+) 1389 WP_409303701.1 DNA repair protein RadA Machinery gene
  V1500_RS00565 (V1500_00565) disA 108053..109126 (+) 1074 WP_409303703.1 DNA integrity scanning diadenylate cyclase DisA -
  V1500_RS00570 (V1500_00570) - 109410..110501 (+) 1092 WP_409303705.1 PIN/TRAM domain-containing protein -
  V1500_RS00575 (V1500_00575) ispD 110518..111219 (+) 702 WP_409303707.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  V1500_RS00580 (V1500_00580) ispF 111231..111710 (+) 480 WP_409303709.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49826.16 Da        Isoelectric Point: 6.7509

>NTDB_id=929590 V1500_RS00560 WP_409303701.1 106661..108049(+) (radA) [Peribacillus sp. SCS-155]
MVAKKKTKFICQSCGYESAKWMGKCPGCGEWNQMVEEVEIVKPARRGAFTHSDASSGGTSRKATPITAIETSQEPRIYTD
LAELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSAQLAQKQKKVLYISGEESVKQTKLRADRLGATSENLFVYSETDM
DYIEQAISAMQPDLVIIDSIQTVYQSEVTSAPGSVSQVRECTAALMRIAKTNGIAIFIVGHVTKEGSIAGPRLLEHMVDT
VLYFEGERHHTYRIVRAVKNRFGSTNEMGIFEMKEGGLEEVANPSEIFLEERSNGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTKPSDCIIGE
IGLTGEVRRVSRIEQRVQEAAKLGFERLVIPANNIGGWTVPKGIEIVGVSTVAEALQYALGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=929590 V1500_RS00560 WP_409303701.1 106661..108049(+) (radA) [Peribacillus sp. SCS-155]
ATGGTAGCTAAGAAAAAAACGAAGTTTATCTGCCAATCATGCGGATACGAATCTGCAAAATGGATGGGGAAATGTCCGGG
ATGCGGGGAATGGAACCAGATGGTGGAGGAAGTAGAAATCGTCAAGCCTGCCAGGAGAGGAGCATTTACTCACTCCGATG
CATCCTCAGGTGGTACCAGCAGAAAAGCTACTCCCATCACAGCAATAGAGACCTCTCAGGAACCGAGAATATATACTGAT
TTAGCGGAATTGAACCGCGCTCTTGGAGGGGGAATCGTCCAGGGATCTCTTGTACTCATTGGAGGAGATCCAGGGATAGG
AAAATCAACACTGCTGCTTCAAGTATCTGCACAGCTGGCGCAAAAGCAGAAAAAAGTACTGTATATTTCGGGAGAAGAGT
CGGTAAAGCAGACAAAATTGAGAGCTGACAGGCTCGGCGCCACCTCCGAAAACCTTTTTGTTTATTCCGAAACAGATATG
GATTATATAGAACAGGCCATCTCTGCCATGCAGCCTGACCTTGTCATCATTGACTCTATCCAAACAGTTTATCAGTCAGA
AGTAACGTCTGCGCCAGGCAGTGTATCGCAGGTAAGAGAATGTACCGCAGCATTAATGAGGATTGCGAAAACCAATGGCA
TAGCTATTTTTATAGTAGGTCATGTCACAAAGGAAGGCTCCATTGCCGGCCCTAGGCTGCTGGAACATATGGTTGATACC
GTTTTATATTTTGAAGGAGAAAGGCACCATACATATAGAATTGTACGTGCCGTAAAGAACAGGTTTGGTTCGACAAATGA
AATGGGAATCTTTGAAATGAAGGAAGGCGGTCTTGAAGAAGTAGCAAATCCATCTGAAATCTTCCTGGAAGAGAGGTCCA
ATGGAGCTTCCGGCTCTACAGTGGTGGCTTCAATGGAAGGAACAAGGCCAGTGCTGGTGGAAATCCAGGCTCTTATATCG
CCAACAAGCTTTGGAAACCCAAGAAGGATGGCAACAGGGATTGACCATAATCGGGTTTCCCTATTAATGGCTGTGCTGGA
AAAGAGAGTAGGTCTGCTTTTACAAAATCAAGATGCATATCTGAAAGTTGCAGGTGGAGTCAAGCTTGATGAGCCGGCAA
TTGATTTGGCTATTGCTGTTAGCATTGCCTCCAGTTTCCGTGACAAACCCACAAAGCCATCTGATTGTATCATAGGTGAA
ATTGGATTAACGGGGGAAGTCAGAAGGGTATCCAGAATTGAACAAAGGGTACAGGAAGCTGCAAAACTGGGTTTTGAGAG
ACTAGTTATACCTGCGAATAACATCGGGGGTTGGACCGTTCCTAAAGGTATTGAAATAGTAGGTGTATCTACAGTCGCGG
AGGCTCTTCAATATGCTTTAGGGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)

AAA domain (AAA_25)

(79-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

78.571

100

0.786
  radA Streptococcus pneumoniae Rx1

62.445

99.134

0.619
  radA Streptococcus pneumoniae D39

62.445

99.134

0.619
  radA Streptococcus pneumoniae R6

62.445

99.134

0.619
  radA Streptococcus pneumoniae TIGR4

62.445

99.134

0.619
  radA Streptococcus mitis NCTC 12261

61.623

98.701

0.608
  radA Streptococcus mitis SK321

61.404

98.701

0.606