Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V1502_RS14785 Genome accession   NZ_CP143546
Coordinates   2979751..2980503 (-) Length   250 a.a.
NCBI ID   WP_409251401.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2974751..2985503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS14770 (V1502_14770) - 2975451..2976257 (-) 807 WP_409251398.1 pyruvate, water dikinase regulatory protein -
  V1502_RS14775 (V1502_14775) - 2976285..2976911 (-) 627 WP_409251399.1 helix-turn-helix transcriptional regulator -
  V1502_RS14780 (V1502_14780) - 2977409..2978782 (+) 1374 WP_409251400.1 glycine--tRNA ligase -
  V1502_RS14785 (V1502_14785) recO 2979751..2980503 (-) 753 WP_409251401.1 DNA repair protein RecO Machinery gene
  V1502_RS14790 (V1502_14790) - 2980627..2980770 (-) 144 WP_409251402.1 YqzL family protein -
  V1502_RS14795 (V1502_14795) era 2980886..2981800 (-) 915 WP_409251403.1 GTPase Era -
  V1502_RS14800 (V1502_14800) - 2981793..2982191 (-) 399 WP_409251404.1 cytidine deaminase -
  V1502_RS14805 (V1502_14805) - 2982529..2982921 (-) 393 WP_409251405.1 diacylglycerol kinase family protein -
  V1502_RS14810 (V1502_14810) ybeY 2982899..2983369 (-) 471 WP_409251406.1 rRNA maturation RNase YbeY -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 29019.43 Da        Isoelectric Point: 8.5391

>NTDB_id=929566 V1502_RS14785 WP_409251401.1 2979751..2980503(-) (recO) [Bacillus sp. SCS-153A]
MLQKCEGIVIRTNNYGESNKIVTIYSRENGKLGVMARGAKKTNSRLSSVSQLFTYGYFLFQKSSGLGTLQQAETIASMRN
IREDLFKTAYSTYVVDLIDKGTEERKPNPFLFEMLFQTLTYINEDYDPDIVTHIFEMKMLPVLGLHPSLDRCAVCGETEG
EFSFSFKENGIICHRCVGNDPYHYKVSPQTIKLLRLFYHFDMNRLGKISVKDSTKEELKKIIRTYYDEYSGLYLKSRKFL
DQIDRMKDLM

Nucleotide


Download         Length: 753 bp        

>NTDB_id=929566 V1502_RS14785 WP_409251401.1 2979751..2980503(-) (recO) [Bacillus sp. SCS-153A]
ATGCTGCAAAAATGCGAAGGAATTGTCATCAGGACAAATAACTACGGTGAATCCAATAAAATTGTGACAATTTATTCAAG
GGAAAATGGGAAATTGGGGGTAATGGCTAGAGGGGCAAAAAAAACCAACAGCCGTTTATCCTCAGTTTCCCAACTTTTTA
CATACGGATATTTTTTATTTCAAAAAAGCAGCGGCCTTGGAACCTTACAGCAGGCGGAGACTATAGCCTCCATGCGTAAT
ATCAGGGAAGACCTTTTTAAGACAGCCTACTCGACCTATGTGGTGGATCTTATAGACAAAGGGACGGAAGAGCGTAAGCC
AAATCCGTTCTTGTTTGAAATGCTTTTTCAAACTCTGACCTACATTAATGAGGACTACGATCCGGATATTGTTACACATA
TCTTTGAAATGAAAATGCTCCCTGTTTTGGGCCTGCATCCTTCCTTGGATAGATGTGCGGTATGCGGTGAAACGGAGGGG
GAGTTTTCGTTTTCCTTTAAGGAAAACGGGATTATCTGCCACCGCTGTGTTGGCAATGATCCCTATCATTATAAGGTTTC
CCCTCAAACGATAAAACTTCTGAGGCTTTTCTATCATTTTGATATGAACCGCTTAGGGAAAATATCTGTTAAAGATTCTA
CAAAAGAAGAACTTAAAAAAATTATCAGGACTTACTATGATGAATATTCTGGTCTGTATCTTAAATCCAGAAAATTTCTG
GATCAAATAGACAGAATGAAGGATCTGATGTAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

63.2

100

0.632