Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   V1502_RS06320 Genome accession   NZ_CP143546
Coordinates   1288635..1289099 (-) Length   154 a.a.
NCBI ID   WP_409253520.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283635..1294099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS06295 (V1502_06295) - 1283677..1284552 (+) 876 WP_409253515.1 NAD(P)-dependent oxidoreductase -
  V1502_RS06300 (V1502_06300) - 1284637..1284816 (+) 180 WP_409253516.1 hypothetical protein -
  V1502_RS06305 (V1502_06305) - 1284857..1286035 (-) 1179 WP_409253517.1 aminotransferase A -
  V1502_RS06310 (V1502_06310) corA 1286205..1287203 (+) 999 WP_409253518.1 magnesium/cobalt transporter CorA -
  V1502_RS06315 (V1502_06315) - 1287536..1288438 (+) 903 WP_409253519.1 chemotaxis protein -
  V1502_RS06320 (V1502_06320) kre 1288635..1289099 (-) 465 WP_409253520.1 YkyB family protein Regulator
  V1502_RS06325 (V1502_06325) ppx 1289392..1290924 (+) 1533 WP_409253521.1 exopolyphosphatase -
  V1502_RS06330 (V1502_06330) - 1290981..1293080 (+) 2100 WP_409253522.1 RNA degradosome polyphosphate kinase -
  V1502_RS06335 (V1502_06335) - 1293538..1293753 (+) 216 WP_409253523.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17616.33 Da        Isoelectric Point: 10.5732

>NTDB_id=929555 V1502_RS06320 WP_409253520.1 1288635..1289099(-) (kre) [Bacillus sp. SCS-153A]
MRNSQDSSPQPATIKNLSQAVFTVNRHAKTAINPKYLYSLKKQALQKMIKEGKATKVGLHFSNNPRFSQQQSDVLVDCGM
YTFHIPPAKSDFENLPHLGTLDKSIRNPKCRMSLNEAKLILEKYTGMKEKKEPTHKSYGRNYQKPVFKRLGDSF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=929555 V1502_RS06320 WP_409253520.1 1288635..1289099(-) (kre) [Bacillus sp. SCS-153A]
TTGAGAAATTCTCAAGATTCATCCCCTCAACCCGCTACAATTAAAAACCTCTCACAAGCTGTTTTCACGGTGAACCGCCA
CGCTAAAACTGCTATCAATCCTAAATATCTATATTCTTTGAAAAAACAGGCGCTTCAAAAAATGATCAAAGAAGGAAAAG
CAACAAAGGTGGGTTTGCACTTTTCCAACAACCCCCGTTTCAGTCAGCAGCAATCAGATGTATTGGTTGACTGCGGCATG
TATACTTTTCATATTCCTCCTGCAAAATCTGATTTTGAAAATCTTCCTCACCTTGGGACACTTGATAAATCGATTAGAAA
TCCAAAGTGCAGAATGAGCCTGAATGAAGCAAAATTGATTTTGGAGAAGTATACTGGCATGAAAGAGAAAAAGGAACCGA
CCCACAAATCTTATGGGCGTAACTATCAAAAGCCTGTATTCAAACGACTGGGCGATAGTTTTTAG

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.514

96.104

0.61