Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V1502_RS00245 Genome accession   NZ_CP143546
Coordinates   50418..50708 (-) Length   96 a.a.
NCBI ID   WP_409254259.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 45418..55708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS00220 (V1502_00220) - 46094..46921 (+) 828 WP_409252454.1 stage 0 sporulation family protein -
  V1502_RS00225 (V1502_00225) yabA 46936..47307 (+) 372 WP_409252455.1 DNA replication initiation control protein YabA -
  V1502_RS00230 (V1502_00230) - 47720..48466 (+) 747 WP_409252456.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V1502_RS00235 (V1502_00235) rsmI 48498..49379 (+) 882 WP_409252457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V1502_RS00240 (V1502_00240) - 49453..50304 (+) 852 WP_409252458.1 STAS domain-containing protein -
  V1502_RS00245 (V1502_00245) abrB 50418..50708 (-) 291 WP_409254259.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V1502_RS00250 (V1502_00250) metG 51195..53156 (+) 1962 WP_409252459.1 methionine--tRNA ligase -
  V1502_RS00255 (V1502_00255) - 53475..54242 (+) 768 WP_409252460.1 TatD family hydrolase -
  V1502_RS00260 (V1502_00260) - 54485..55702 (+) 1218 WP_409252461.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10914.78 Da        Isoelectric Point: 5.9125

>NTDB_id=929538 V1502_RS00245 WP_409254259.1 50418..50708(-) (abrB) [Bacillus sp. SCS-153A]
MIMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDSLEIYVDDERIILKKYKPSMTCHVTGEVSDDNIKLADGKLILSRDG
AEKIIKEIQESFQLEK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=929538 V1502_RS00245 WP_409254259.1 50418..50708(-) (abrB) [Bacillus sp. SCS-153A]
ATTATAATGAAATCGACTGGTATTGTACGTAAGGTAGATGAGCTTGGACGTGTGGTAATTCCGATTGAATTGCGCCGTAC
TTTAGGAATTGCTGAAAAAGACTCTTTGGAGATCTATGTAGATGATGAAAGAATCATCCTTAAGAAATATAAGCCGAGCA
TGACTTGCCATGTAACTGGAGAAGTATCTGATGACAACATCAAGTTAGCAGATGGAAAATTGATCCTAAGCCGTGATGGT
GCTGAAAAGATCATTAAAGAAATTCAGGAATCTTTTCAACTTGAAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

83.871

96.875

0.813