Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   V1502_RS00020 Genome accession   NZ_CP143546
Coordinates   3348..4466 (+) Length   372 a.a.
NCBI ID   WP_409252431.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS00005 (V1502_00005) dnaA 1..1347 (+) 1347 WP_409252428.1 chromosomal replication initiator protein DnaA -
  V1502_RS00010 (V1502_00010) dnaN 1653..2789 (+) 1137 WP_409252429.1 DNA polymerase III subunit beta -
  V1502_RS00015 (V1502_00015) yaaA 3112..3333 (+) 222 WP_409252430.1 S4 domain-containing protein YaaA -
  V1502_RS00020 (V1502_00020) recF 3348..4466 (+) 1119 WP_409252431.1 DNA replication/repair protein RecF Machinery gene
  V1502_RS00025 (V1502_00025) remB 4476..4736 (+) 261 WP_409252432.1 extracellular matrix regulator RemB -
  V1502_RS00030 (V1502_00030) gyrB 4807..6723 (+) 1917 WP_409254405.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43102.33 Da        Isoelectric Point: 7.4088

>NTDB_id=929536 V1502_RS00020 WP_409252431.1 3348..4466(+) (recF) [Bacillus sp. SCS-153A]
MYIEEIQLKNYRNYDSVDISFENNVNVILGENAQGKTNIMESIYVLAMAKSHRTSNDKDLIRWDEEYAKIKGRIKKHNGS
LPLELVISKKGKKAKSNHIEQKKLSQYVGNMNVVMFAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDIALYQKILQQR
NHYLKMLQTKKQKDETMLDVLTEQLVEMTGKIIKKRFDFIKLLQEWARPIHSGISRGLESLDIHYKPSVDVCNDQDWSKM
VEIIENKFHSIRQREIDRGVTLAGPHRDDLQFFVNDRDVQTFGSQGQQRTTALSLKLAEIELIHSEIKEYPILLLDDVLS
ELDDFRQSHLLNTIQGKVQTFVTTTSVDGIDHQTLNDATTFEVESGHIKRVK

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=929536 V1502_RS00020 WP_409252431.1 3348..4466(+) (recF) [Bacillus sp. SCS-153A]
ATGTACATTGAAGAAATACAGCTCAAAAATTATCGGAATTATGACTCCGTCGATATTTCTTTTGAAAATAATGTGAACGT
CATTCTGGGTGAGAACGCCCAGGGAAAGACCAATATCATGGAGTCGATTTATGTCTTGGCAATGGCAAAATCCCACAGGA
CATCAAATGATAAAGATTTGATACGCTGGGATGAGGAATATGCTAAAATAAAAGGTAGGATCAAAAAACATAATGGCTCG
CTTCCCTTGGAATTAGTCATCTCCAAAAAGGGGAAGAAAGCCAAGTCCAATCATATTGAACAGAAGAAATTGAGCCAGTA
TGTTGGCAATATGAATGTCGTCATGTTTGCGCCTGAAGATCTCCATCTTGTAAAAGGGAGCCCTCAAGTAAGGCGTCGTT
TTATTGATATGGAAATCGGGCAGGTCTCACCTGTCTATTTGCATGATATTGCGTTGTATCAAAAGATCCTTCAGCAGCGT
AATCATTATTTGAAGATGCTGCAGACAAAAAAACAGAAGGATGAGACGATGCTGGATGTTTTGACCGAACAGCTGGTTGA
AATGACAGGCAAGATCATCAAAAAACGCTTTGATTTTATCAAACTGCTTCAAGAATGGGCACGTCCCATCCATTCAGGTA
TATCAAGGGGTCTGGAATCCCTGGATATTCACTATAAACCGTCTGTCGATGTATGCAATGATCAAGATTGGTCGAAAATG
GTAGAGATAATAGAGAACAAGTTCCACAGTATTCGTCAAAGGGAGATCGACAGAGGTGTCACCCTCGCCGGTCCACACAG
GGACGACCTGCAGTTTTTCGTAAATGACAGGGATGTGCAGACGTTCGGTTCGCAAGGACAGCAGCGTACGACTGCTCTAT
CGTTAAAACTGGCGGAAATTGAATTGATTCATTCGGAAATTAAAGAATACCCAATTCTTTTGCTGGATGATGTGTTGTCA
GAACTGGACGATTTCAGGCAGTCGCACTTATTGAATACCATTCAGGGAAAAGTGCAGACCTTTGTCACGACAACCAGTGT
TGATGGCATCGACCACCAGACATTGAATGATGCCACAACTTTCGAAGTTGAGTCCGGTCATATCAAGAGAGTGAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

70.38

98.925

0.696