Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8917_RS06320 Genome accession   NZ_AP028344
Coordinates   1215903..1216397 (+) Length   164 a.a.
NCBI ID   WP_052804542.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10331     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210903..1221397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8917_RS06305 (B10331_12320) - 1212289..1213467 (-) 1179 WP_218982751.1 metal-dependent hydrolase -
  R8917_RS06310 (B10331_12330) gpsA 1213477..1214373 (-) 897 WP_079460664.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8917_RS06315 (B10331_12340) gatB 1214370..1215788 (-) 1419 WP_002856133.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8917_RS06320 (B10331_12350) luxS 1215903..1216397 (+) 495 WP_052804542.1 S-ribosylhomocysteine lyase Regulator
  R8917_RS06325 (B10331_12360) - 1216708..1217700 (+) 993 WP_002882217.1 isopenicillin N synthase family dioxygenase -
  R8917_RS06330 (B10331_12370) - 1217711..1218481 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8917_RS06335 (B10331_12380) metE 1218493..1220757 (+) 2265 WP_052804543.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18240.15 Da        Isoelectric Point: 5.9947

>NTDB_id=92953 R8917_RS06320 WP_052804542.1 1215903..1216397(+) (luxS) [Campylobacter jejuni strain BCH-10331]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=92953 R8917_RS06320 WP_052804542.1 1215903..1216397(+) (luxS) [Campylobacter jejuni strain BCH-10331]
ATGCCATTATTAGATAGTTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment