Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V1501_RS14465 Genome accession   NZ_CP143545
Coordinates   2863681..2865387 (-) Length   568 a.a.
NCBI ID   WP_409289181.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2858681..2870387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS14440 (V1501_14440) - 2858785..2859039 (+) 255 WP_409289174.1 DUF2627 domain-containing protein -
  V1501_RS14445 (V1501_14445) - 2859084..2859824 (-) 741 WP_409289175.1 glycerophosphodiester phosphodiesterase -
  V1501_RS14450 (V1501_14450) spo0A 2859964..2860755 (-) 792 WP_409289176.1 sporulation transcription factor Spo0A -
  V1501_RS14455 (V1501_14455) spoIVB 2860987..2862282 (-) 1296 WP_409289178.1 SpoIVB peptidase -
  V1501_RS14460 (V1501_14460) - 2862727..2863518 (+) 792 WP_409289179.1 spore coat protein -
  V1501_RS14465 (V1501_14465) recN 2863681..2865387 (-) 1707 WP_409289181.1 DNA repair protein RecN Machinery gene
  V1501_RS14470 (V1501_14470) ahrC 2865406..2865855 (-) 450 WP_409289183.1 transcriptional regulator AhrC/ArgR -
  V1501_RS14475 (V1501_14475) - 2866094..2866939 (-) 846 WP_409289184.1 TlyA family RNA methyltransferase -
  V1501_RS14480 (V1501_14480) dxs 2866943..2868835 (-) 1893 WP_409289185.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V1501_RS14485 (V1501_14485) - 2869019..2869912 (-) 894 WP_409289186.1 polyprenyl synthetase family protein -
  V1501_RS14490 (V1501_14490) xseB 2869916..2870146 (-) 231 WP_409289188.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 63569.03 Da        Isoelectric Point: 5.0333

>NTDB_id=929509 V1501_RS14465 WP_409289181.1 2863681..2865387(-) (recN) [Peribacillus sp. SCS-37]
MLAELSIKNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGETKAELEGLFQIDDENHPIHAK
AAQFGVDISDGMVVLRRDISSSGKSVCRVNGKLVTIAILREIGSTLIDIHSQHESQELMDPDHHLPLLDFFGGAEIRAAL
LEYQELYKRYEASARQLKSLNQDEQQMAHRLDLIQFQFDEINKAGLKIKEDEELTEEKQKISNFERIHEALQSAYHSLGG
EQRGLDWIGQAVSQLEEAASLDEDYTGIQENAANSFYILEDIVSSIRNQLDSLEYDPERLDFIEGRLNEINGLKRKYGRT
VEDILEYAAAIEEEIETIQNRETHIAKIEKELSSIRKDLLVEASNLSQLRQKYAKKLTDQIHKELKDLYMEKTVFEVHFH
QKAAEQDGADKIQRSGLDIVEFYISTNPGEPLKPLAKIASGGELSRIILALKNIFSEHQGITSIIFDEVDTGVSGRVAQS
MAEKIYRVSVGSQVLCISHLPQVAAMADTHLFISKQTKSGRTKTKVAPLTQEEKIREIGRMISGVEITELTKEHAKELLH
LANQIKSA

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=929509 V1501_RS14465 WP_409289181.1 2863681..2865387(-) (recN) [Peribacillus sp. SCS-37]
TTGCTAGCGGAATTGTCGATTAAAAACTTTGCAATAATTGAAGCCCTTTCTGTTTCTTTCGAAAAGGGCTTGACTGTTTT
GACCGGGGAGACTGGTGCCGGTAAGTCCATCATCATAGATGCCATCAGTCTCCTTGTAGGAGGGAGAGGCTCTTCTGAAT
TTGTCAGGCACGGTGAAACGAAGGCTGAGCTTGAGGGGCTGTTTCAGATTGATGACGAAAATCATCCGATTCATGCTAAA
GCAGCCCAATTCGGGGTTGATATCAGCGATGGCATGGTTGTTCTTCGCAGGGATATATCAAGTTCAGGAAAAAGTGTCTG
CCGGGTAAATGGCAAACTTGTGACCATTGCTATTTTAAGGGAAATAGGCAGCACGCTCATCGACATACACAGCCAGCACG
AAAGCCAGGAGCTTATGGACCCGGATCACCACCTGCCTCTCCTTGACTTTTTTGGAGGAGCTGAGATCAGGGCTGCACTC
CTGGAATATCAGGAATTGTATAAAAGATACGAAGCCAGTGCCAGACAGCTTAAAAGCCTGAATCAAGACGAACAGCAAAT
GGCCCACAGGCTGGATCTGATTCAATTTCAGTTCGATGAGATCAATAAGGCAGGGCTCAAGATTAAAGAGGATGAGGAGC
TTACAGAGGAAAAGCAGAAAATATCCAACTTTGAGAGGATCCACGAAGCCCTTCAGTCTGCCTATCATTCACTAGGCGGG
GAGCAGAGGGGCCTTGACTGGATCGGACAGGCAGTCAGCCAGCTTGAAGAAGCTGCGTCATTGGATGAGGATTATACTGG
GATTCAGGAAAATGCAGCAAACAGCTTCTATATATTGGAGGACATTGTTTCTTCGATCCGCAATCAGCTGGATTCACTGG
AATACGATCCGGAACGCCTGGACTTCATTGAGGGCAGGCTGAATGAAATCAACGGCCTGAAACGAAAGTATGGCAGGACG
GTCGAAGACATCCTTGAATATGCCGCAGCGATAGAGGAAGAAATTGAAACGATTCAAAATCGTGAGACACATATCGCAAA
AATTGAGAAAGAGCTGTCTTCCATCCGCAAGGACCTCCTGGTTGAAGCCAGTAACCTCTCCCAGCTGCGCCAGAAATATG
CCAAAAAGCTGACTGATCAGATTCATAAGGAACTGAAGGACTTATATATGGAGAAAACAGTCTTTGAAGTCCATTTCCAT
CAGAAAGCGGCGGAGCAGGATGGAGCTGATAAGATTCAGAGAAGCGGGCTGGATATTGTGGAATTCTACATATCCACAAA
TCCCGGCGAGCCGTTGAAGCCGCTCGCCAAAATAGCATCAGGCGGAGAGCTGTCCAGGATCATCCTGGCACTTAAGAACA
TATTCTCAGAGCATCAGGGCATTACATCCATCATCTTTGACGAAGTTGATACAGGCGTCAGCGGCCGGGTTGCACAGTCG
ATGGCTGAGAAAATCTATCGGGTTTCCGTCGGCTCTCAAGTGCTGTGCATTTCCCACCTGCCCCAGGTAGCCGCAATGGC
TGATACCCATCTGTTCATCTCGAAGCAGACGAAGAGCGGCCGCACCAAGACAAAAGTGGCTCCTCTTACTCAGGAAGAAA
AAATTAGAGAAATCGGCCGGATGATCTCTGGCGTTGAAATAACAGAGCTGACCAAAGAACATGCAAAAGAACTGCTGCAC
CTGGCAAACCAGATTAAAAGCGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.194

100

0.641