Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V1501_RS05505 Genome accession   NZ_CP143545
Coordinates   1078757..1080571 (+) Length   604 a.a.
NCBI ID   WP_409291828.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073757..1085571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS05485 (V1501_05485) spxA 1074130..1074525 (+) 396 WP_409291824.1 transcriptional regulator SpxA -
  V1501_RS05490 (V1501_05490) mecA 1074900..1075574 (+) 675 WP_409291825.1 adaptor protein MecA -
  V1501_RS05495 (V1501_05495) cls 1075717..1077225 (+) 1509 WP_409291826.1 cardiolipin synthase -
  V1501_RS05500 (V1501_05500) - 1077449..1078639 (+) 1191 WP_409291827.1 competence protein CoiA -
  V1501_RS05505 (V1501_05505) pepF 1078757..1080571 (+) 1815 WP_409291828.1 oligoendopeptidase F Regulator
  V1501_RS05510 (V1501_05510) - 1081599..1082462 (-) 864 WP_409291829.1 ClpXP adapter SpxH family protein -
  V1501_RS05515 (V1501_05515) - 1082459..1082863 (-) 405 WP_409291830.1 globin -
  V1501_RS05520 (V1501_05520) - 1083024..1083689 (-) 666 WP_409291831.1 lytic transglycosylase domain-containing protein -
  V1501_RS05525 (V1501_05525) - 1083723..1084298 (-) 576 WP_409291832.1 CYTH domain-containing protein -
  V1501_RS05530 (V1501_05530) - 1084490..1085122 (+) 633 WP_409291833.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69504.82 Da        Isoelectric Point: 4.7878

>NTDB_id=929499 V1501_RS05505 WP_409291828.1 1078757..1080571(+) (pepF) [Peribacillus sp. SCS-37]
MSQETTVKSLPARSEIPVNDTWKLEDIFATDKDWETEFQGLKEEIKKADAYKGTLGESADKLFAALQFQDEIMERLGRLY
TYAHMRYDQDTTNSYYQGFDDRAKTLYTQAASAFSFAVPEILGIDPQTIERFLDEHGELKLYKQALDEINLQRPHVLSAD
QEALLAQASEVMSASQNTFGMLNNADLEFPAIKDEDGETVEITHGRYIRFLESEDRRVREEAFKAVYNTYGKFKNTFAST
LAGTVKKDNFNAQIRNYDSARHAALSANNIPESVYDNLVNTVNDNLSLLHRYVELRKKVLKLDELHIYDMYTPLVKDVKM
KVSYEEAKEYIINGLAPLGEEYSSILKEGFEKRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYMLKTVDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKSQ
EGEALTSELLTKEYYELNKKYYGTNIVIDDEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKSILEEGEPAVGRYIEFL
KSGSSDYPIEVLKKAGVDMNQAEPIQQACKVFEEKLNEMESLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=929499 V1501_RS05505 WP_409291828.1 1078757..1080571(+) (pepF) [Peribacillus sp. SCS-37]
ATGTCACAGGAAACTACAGTCAAGTCTTTGCCAGCCAGAAGTGAAATACCTGTTAATGATACATGGAAGCTGGAAGATAT
CTTTGCTACTGATAAGGATTGGGAAACTGAATTTCAGGGTCTCAAGGAAGAAATCAAAAAAGCGGACGCCTATAAAGGTA
CACTGGGGGAAAGTGCGGATAAATTGTTTGCAGCCCTTCAATTCCAGGATGAAATCATGGAACGCCTGGGCAGGCTGTAT
ACATATGCTCATATGCGGTATGATCAGGACACCACTAATTCTTATTACCAGGGATTCGACGACCGTGCCAAAACTTTGTA
TACCCAGGCTGCCAGCGCCTTCTCTTTTGCGGTTCCCGAGATTCTCGGCATTGATCCGCAAACGATTGAACGCTTTCTTG
ATGAGCATGGGGAGCTTAAGCTGTATAAGCAGGCCCTTGATGAAATCAATCTGCAGAGACCGCATGTGCTTTCCGCAGAC
CAGGAAGCCCTCCTGGCACAGGCGTCAGAGGTTATGTCTGCTTCACAAAATACGTTTGGCATGCTGAACAATGCTGATCT
TGAATTCCCGGCCATCAAGGATGAAGATGGTGAAACAGTGGAAATTACCCATGGAAGGTATATACGCTTTCTTGAAAGCG
AGGACCGGAGGGTAAGGGAAGAGGCATTTAAAGCGGTGTACAATACGTACGGCAAATTCAAGAACACCTTTGCAAGCACA
CTTGCTGGCACGGTGAAGAAAGATAATTTCAACGCGCAGATCCGTAATTATGATTCTGCACGCCATGCTGCATTAAGCGC
CAATAATATCCCAGAGTCGGTTTATGATAATCTTGTTAACACAGTCAATGATAATCTTTCTCTGCTTCACCGTTATGTGG
AGCTGCGGAAAAAGGTGCTGAAGCTGGATGAGCTCCACATTTATGATATGTATACACCGCTTGTTAAAGATGTGAAAATG
AAGGTTTCATACGAAGAAGCAAAAGAATATATCATAAATGGCCTTGCACCGCTTGGTGAGGAATACAGCTCAATTCTTAA
GGAAGGGTTTGAAAAACGCTGGGTGGATGTCCATGAAAATAAAGGCAAGCGCAGCGGGGCTTATTCGTCAGGAGCATATG
GGACCAATCCGTATATATTGATGAACTGGCAGGACAACGTGAATAATCTGTTCACCCTGGCCCATGAATTCGGCCACTCG
GTACACAGCTACTATACCAGGAAATCTCAGCCGTATCCTTATGGGAATTATTCAATATTTGTTGCGGAAGTGGCTTCCAC
ATGCAATGAAGCGCTGCTCAATGATTATATGCTGAAGACCGTGGATGACGAGAAAAAACGCCTTTACCTTCTTAACCATT
ACCTGGAGGGCTTCAGGGGAACCGTTTTCCGCCAGACGATGTTCGCAGAATTCGAGCATCTTATCCATCAAAAATCGCAA
GAGGGCGAAGCGCTGACTTCGGAGCTTTTGACCAAGGAATATTACGAGCTGAACAAGAAATACTATGGAACGAATATCGT
AATTGACGATGAAATCGGGCTTGAATGGTCCAGGATTCCGCATTTCTATTACAATTATTATGTATACCAATATGCAACCG
GCTTTAGTGCGGCTACAGCCTTGAGCAAATCCATTCTTGAAGAGGGAGAGCCGGCAGTGGGAAGATATATTGAATTCCTG
AAGTCCGGAAGCTCAGATTATCCTATTGAAGTCCTGAAAAAAGCAGGAGTCGATATGAATCAGGCGGAACCAATTCAGCA
GGCATGCAAGGTATTTGAAGAAAAACTGAATGAGATGGAAAGTTTATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.254

97.848

0.492