Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   V1501_RS05410 Genome accession   NZ_CP143545
Coordinates   1059466..1059657 (+) Length   63 a.a.
NCBI ID   WP_409291810.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054466..1064657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS05385 (V1501_05385) argF 1055921..1056880 (+) 960 WP_409291805.1 ornithine carbamoyltransferase -
  V1501_RS05390 (V1501_05390) - 1057141..1057332 (+) 192 WP_409291806.1 YjzC family protein -
  V1501_RS05395 (V1501_05395) - 1057397..1057585 (-) 189 WP_409291807.1 YjzD family protein -
  V1501_RS05400 (V1501_05400) - 1057766..1058491 (+) 726 WP_409291808.1 hydrolase -
  V1501_RS05405 (V1501_05405) - 1058566..1059351 (+) 786 WP_409291809.1 hypothetical protein -
  V1501_RS05410 (V1501_05410) comZ 1059466..1059657 (+) 192 WP_409291810.1 ComZ family protein Regulator
  V1501_RS05415 (V1501_05415) - 1059683..1059907 (-) 225 WP_409291811.1 hypothetical protein -
  V1501_RS05420 (V1501_05420) - 1060110..1061045 (+) 936 WP_409291812.1 beta-ketoacyl-ACP synthase III -
  V1501_RS05425 (V1501_05425) fabF 1061088..1062326 (+) 1239 WP_409291813.1 beta-ketoacyl-ACP synthase II -
  V1501_RS05430 (V1501_05430) - 1062479..1063255 (+) 777 WP_409291814.1 DUF2268 domain-containing protein -
  V1501_RS05435 (V1501_05435) - 1063479..1064234 (+) 756 WP_409293258.1 YjbA family protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7373.51 Da        Isoelectric Point: 4.3297

>NTDB_id=929495 V1501_RS05410 WP_409291810.1 1059466..1059657(+) (comZ) [Peribacillus sp. SCS-37]
MDQNRNMEFMAIAMKYFPEAKERLDEAGIELSMDLLPHFMDLFQKVMQDAYELGKQDALKQGT

Nucleotide


Download         Length: 192 bp        

>NTDB_id=929495 V1501_RS05410 WP_409291810.1 1059466..1059657(+) (comZ) [Peribacillus sp. SCS-37]
ATGGACCAAAATAGAAATATGGAATTCATGGCCATTGCCATGAAATATTTTCCTGAAGCCAAGGAAAGGCTGGATGAGGC
AGGAATAGAATTATCCATGGATCTTCTGCCGCATTTTATGGACTTATTCCAAAAGGTCATGCAGGATGCTTACGAGCTTG
GAAAGCAGGATGCACTTAAGCAGGGCACTTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

58.621

92.063

0.54