Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V1501_RS00530 Genome accession   NZ_CP143545
Coordinates   102550..103938 (+) Length   462 a.a.
NCBI ID   WP_409290956.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97550..108938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS00510 (V1501_00510) - 97784..98245 (+) 462 WP_409290952.1 CtsR family transcriptional regulator -
  V1501_RS00515 (V1501_00515) - 98274..98840 (+) 567 WP_409290953.1 UvrB/UvrC motif-containing protein -
  V1501_RS00520 (V1501_00520) - 98837..99904 (+) 1068 WP_409290954.1 protein arginine kinase -
  V1501_RS00525 (V1501_00525) clpC 99927..102362 (+) 2436 WP_409290955.1 ATP-dependent protease ATP-binding subunit ClpC -
  V1501_RS00530 (V1501_00530) radA 102550..103938 (+) 1389 WP_409290956.1 DNA repair protein RadA Machinery gene
  V1501_RS00535 (V1501_00535) disA 103941..105014 (+) 1074 WP_409290957.1 DNA integrity scanning diadenylate cyclase DisA -
  V1501_RS00540 (V1501_00540) - 105210..106301 (+) 1092 WP_409290958.1 PIN/TRAM domain-containing protein -
  V1501_RS00545 (V1501_00545) ispD 106322..107020 (+) 699 WP_409290959.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  V1501_RS00550 (V1501_00550) ispF 107035..107511 (+) 477 WP_409290960.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50043.58 Da        Isoelectric Point: 7.0710

>NTDB_id=929490 V1501_RS00530 WP_409290956.1 102550..103938(+) (radA) [Peribacillus sp. SCS-37]
MVKKKTKFICGSCGYESAKWMGKCPGCGDWNKMVEEVEIVKPARRGAFTHSEGKDFGGERQKAAPITSIATIQEPRITTD
LIELNRVLGGGIVHGSLVLIGGDPGIGKSTLLLQVSSQLANKEKKVLYISGEESVKQTKLRSERLGVTSANLFVYSETDM
DYIGQAIKEVAPDLVIIDSIQTVFNAEVTSAPGSVSQVRECTAQLMRIAKTNGIAIFIVGHVTKEGSIAGPRLLEHMVDT
VLYFEGERHHTYRIVRAVKNRFGSTNEMGIFEMKENGLEEVENPSEIFLEERSQGGSGSTVVASMEGTRPVLVEIQALIS
PTSFGTPRRMATGTDHNRISLIMAVLEKRVGMLLQNQDAYLKVAGGIKLDEPAIDLAIAVSIASSFRDKPTRQTDCLIGE
VGLTGEVRRVSRIEQRVQEAVKLGFDRIILPANNLGGWSVPKGVELVGVSTISEALQCALGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=929490 V1501_RS00530 WP_409290956.1 102550..103938(+) (radA) [Peribacillus sp. SCS-37]
ATGGTTAAGAAGAAAACAAAATTCATCTGCGGCTCCTGCGGCTATGAATCTGCCAAATGGATGGGAAAATGCCCAGGGTG
CGGAGATTGGAATAAGATGGTTGAGGAAGTGGAAATCGTTAAGCCTGCAAGAAGGGGGGCATTCACCCATTCAGAGGGCA
AAGATTTTGGCGGTGAACGCCAGAAGGCTGCTCCGATCACCTCCATTGCGACCATTCAGGAACCAAGGATCACTACGGAT
TTAATTGAATTGAACCGCGTCCTCGGCGGGGGTATTGTACACGGATCCCTTGTACTGATTGGAGGAGATCCGGGTATCGG
AAAATCCACCCTGCTCCTTCAGGTATCATCACAGCTCGCCAATAAGGAGAAAAAGGTTTTATATATATCAGGAGAGGAAT
CCGTCAAGCAGACGAAACTTAGGTCAGAGCGTCTTGGTGTGACTTCGGCCAATTTATTCGTCTATTCGGAGACGGATATG
GATTATATCGGGCAGGCCATCAAAGAAGTGGCACCTGACCTCGTAATCATCGATTCCATCCAGACTGTATTCAACGCTGA
GGTCACTTCGGCGCCGGGAAGCGTATCACAGGTACGTGAATGTACAGCACAATTGATGAGAATTGCGAAGACCAACGGAA
TTGCGATTTTTATTGTGGGGCATGTAACAAAGGAAGGATCGATTGCCGGTCCGCGGCTGCTTGAACATATGGTGGATACA
GTCCTTTACTTTGAGGGTGAAAGACACCATACCTACAGGATTGTCAGGGCTGTGAAAAATAGATTTGGCTCCACCAACGA
AATGGGCATTTTTGAAATGAAGGAAAACGGACTGGAGGAAGTGGAAAACCCGTCCGAGATTTTTCTTGAAGAGAGATCCC
AGGGAGGCTCGGGATCGACGGTAGTGGCTTCGATGGAGGGGACGAGGCCGGTGCTTGTCGAAATCCAGGCTCTCATATCA
CCCACAAGTTTTGGTACTCCAAGGAGGATGGCGACCGGAACCGACCATAACCGGATATCCCTTATCATGGCCGTTCTGGA
AAAAAGAGTGGGCATGCTGCTTCAAAACCAGGACGCGTATCTCAAGGTCGCGGGAGGCATCAAGCTGGATGAGCCGGCCA
TTGATCTAGCCATTGCAGTGAGCATCGCATCAAGCTTCAGGGATAAGCCTACCCGCCAGACAGACTGCCTGATCGGCGAA
GTGGGTCTTACTGGGGAAGTGAGGAGGGTATCCCGAATAGAACAAAGGGTCCAGGAAGCAGTTAAGCTTGGATTTGACCG
CATTATTCTCCCTGCGAATAATCTCGGCGGCTGGAGCGTGCCAAAAGGGGTGGAGCTTGTCGGGGTATCAACTATATCCG
AGGCCCTTCAATGCGCATTAGGAGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-226)

Subunit ChlI of Mg-chelatase (ChlI)

(367-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.73

100

0.749
  radA Streptococcus pneumoniae Rx1

61.002

99.351

0.606
  radA Streptococcus pneumoniae D39

61.002

99.351

0.606
  radA Streptococcus pneumoniae R6

61.002

99.351

0.606
  radA Streptococcus pneumoniae TIGR4

61.002

99.351

0.606
  radA Streptococcus mitis NCTC 12261

61.002

99.351

0.606
  radA Streptococcus mitis SK321

60.784

99.351

0.604