Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V1499_RS14445 Genome accession   NZ_CP143543
Coordinates   2862096..2863784 (-) Length   562 a.a.
NCBI ID   WP_409270596.1    Uniprot ID   -
Organism   Neobacillus sp. SCS-31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2857096..2868784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1499_RS14430 (V1499_14430) - 2859290..2859526 (+) 237 WP_409270594.1 DUF2627 domain-containing protein -
  V1499_RS14435 (V1499_14435) spo0A 2859625..2860413 (-) 789 WP_409270595.1 sporulation transcription factor Spo0A -
  V1499_RS14440 (V1499_14440) spoIVB 2860683..2861960 (-) 1278 WP_409276307.1 SpoIVB peptidase -
  V1499_RS14445 (V1499_14445) recN 2862096..2863784 (-) 1689 WP_409270596.1 DNA repair protein RecN Machinery gene
  V1499_RS14450 (V1499_14450) ahrC 2863800..2864249 (-) 450 WP_316569673.1 transcriptional regulator AhrC/ArgR -
  V1499_RS14455 (V1499_14455) - 2864404..2865249 (-) 846 WP_409270597.1 TlyA family RNA methyltransferase -
  V1499_RS14460 (V1499_14460) dxs 2865253..2867145 (-) 1893 WP_409270598.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V1499_RS14465 (V1499_14465) - 2867451..2868335 (-) 885 WP_409270599.1 polyprenyl synthetase family protein -
  V1499_RS14470 (V1499_14470) - 2868338..2868571 (-) 234 WP_316569669.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 62698.73 Da        Isoelectric Point: 5.6686

>NTDB_id=929467 V1499_RS14445 WP_409270596.1 2862096..2863784(-) (recN) [Neobacillus sp. SCS-31]
MLTELSIKNFAIIEALSVSFSKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGEEKAEIEGLFILDDKKHPCVEK
ASEYGIEIEDAMIVLRRDISQNGKSVCRVNGKLVTLTVLREIGGTLVDIHGQHEHQELMNEALHLSLLDQFGNHGIFPVL
ESYQRVYGKYEETLGKLRKLSENEQQMAHRLDLIQFQYEEITTANLKPDEDEELAEEKQRLVNFEKIFESVQSGYNALKG
DSRALDWAGEAMGLLEGAAALDPSYKDTFEAISNSYYMLEDAASTLRNRLELLEYDPERLNEIEARLTEINQLKRKYGKT
IPEILSYAEKISAEIDALQNKETHIGNLEKELAQLKKHLSSEGSNLTSIRKKSAEKLEKLIHKELKDLYMAKTVFEIRFL
NERSQYTRMGADKVEFFISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIF
KVATGSQVLCISHLPQVAAMADTHLLISKVTKGGRTKTSVVPLNEEEKVAEIVRMISGVEITDLTKEHAKELLLLASKTK
NT

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=929467 V1499_RS14445 WP_409270596.1 2862096..2863784(-) (recN) [Neobacillus sp. SCS-31]
TTGTTAACGGAACTATCCATTAAGAATTTCGCAATCATTGAGGCCCTTTCTGTATCGTTTTCAAAGGGCCTGACTGTTTT
GACCGGGGAAACCGGCGCTGGCAAATCGATTATCATTGATGCCATCCACCTCCTTGTCGGCGGAAGGGGTTCATCTGAAT
TTGTCCGCCACGGAGAGGAAAAGGCGGAGATTGAAGGCCTTTTCATTCTTGACGATAAAAAACATCCATGTGTCGAGAAA
GCTTCGGAATATGGCATTGAAATTGAAGACGCAATGATCGTGCTGCGACGGGATATTTCCCAAAATGGGAAAAGTGTTTG
CAGGGTAAACGGGAAGCTCGTAACGTTAACGGTTCTAAGGGAAATTGGCGGGACGCTCGTCGACATCCATGGACAGCACG
AACATCAGGAGTTGATGAATGAAGCACTCCATCTGTCACTTCTCGATCAATTCGGAAACCATGGCATATTTCCGGTCCTT
GAGTCGTACCAGCGGGTTTATGGAAAATATGAAGAAACGCTTGGAAAGCTTCGCAAGCTAAGTGAAAATGAACAGCAAAT
GGCCCACAGGCTCGACCTGATTCAATTCCAATACGAGGAAATCACCACTGCCAACCTTAAGCCGGATGAAGACGAAGAAC
TCGCCGAAGAAAAGCAACGGCTAGTCAATTTCGAAAAAATATTTGAATCTGTCCAATCAGGCTATAATGCACTGAAAGGT
GATTCCCGCGCGCTTGACTGGGCCGGGGAGGCAATGGGGCTTCTTGAAGGCGCCGCTGCCCTTGACCCATCCTACAAGGA
CACGTTTGAAGCGATTTCAAACAGCTATTATATGCTTGAAGACGCAGCTTCCACGCTTCGTAACAGGCTTGAGCTTCTGG
AATATGACCCAGAAAGGCTGAATGAAATCGAGGCAAGGCTGACCGAAATCAATCAATTGAAACGGAAATATGGAAAAACC
ATTCCGGAAATCCTGTCATACGCGGAAAAAATCAGTGCCGAAATTGACGCACTCCAGAATAAAGAAACCCATATCGGGAA
TCTTGAAAAAGAACTCGCCCAATTGAAAAAACATTTATCAAGTGAAGGCTCAAACCTGACTTCCATAAGGAAAAAATCGG
CTGAAAAGCTCGAAAAGCTTATCCATAAAGAACTGAAGGACCTTTACATGGCGAAAACCGTTTTTGAAATCCGGTTTTTA
AATGAACGTTCCCAGTATACACGGATGGGTGCGGACAAGGTTGAATTTTTCATTTCCACAAATCCTGGCGAACCTTTAAA
GCCGCTTTCCAAAGTGGCGTCCGGCGGGGAATTGTCGCGTATTATGCTTGCTTTAAAGAGCATCTTCTCAAAACACCAAG
GGGTAACATCCATTATATTTGATGAAGTTGATACGGGGGTAAGCGGAAGAGTGGCCCAGGCAATTGCCGAAAAGATTTTC
AAGGTTGCAACAGGGTCACAAGTTCTCTGTATTTCACACCTTCCACAAGTAGCTGCGATGGCGGATACCCATCTGCTTAT
TTCAAAAGTAACAAAAGGCGGTAGGACTAAAACATCCGTCGTCCCGTTAAATGAAGAGGAGAAAGTAGCGGAAATCGTCC
GGATGATTTCCGGGGTAGAGATAACCGACCTCACAAAGGAACATGCAAAGGAATTGCTGCTCCTCGCTTCCAAAACTAAA
AACACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.632

100

0.632