Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   V1498_RS16420 Genome accession   NZ_CP143542
Coordinates   3250550..3250732 (-) Length   60 a.a.
NCBI ID   WP_409294746.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245550..3255732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS16395 (V1498_16395) - 3245783..3246538 (-) 756 WP_409299324.1 YjbA family protein -
  V1498_RS16400 (V1498_16400) - 3246762..3247538 (-) 777 WP_409294742.1 DUF2268 domain-containing protein -
  V1498_RS16405 (V1498_16405) fabF 3247869..3249107 (-) 1239 WP_409294743.1 beta-ketoacyl-ACP synthase II -
  V1498_RS16410 (V1498_16410) - 3249150..3250085 (-) 936 WP_409294744.1 beta-ketoacyl-ACP synthase III -
  V1498_RS16415 (V1498_16415) - 3250288..3250515 (+) 228 WP_409294745.1 hypothetical protein -
  V1498_RS16420 (V1498_16420) comZ 3250550..3250732 (-) 183 WP_409294746.1 ComZ family protein Regulator
  V1498_RS16425 (V1498_16425) - 3250851..3251636 (-) 786 WP_409294747.1 hypothetical protein -
  V1498_RS16430 (V1498_16430) - 3251711..3252436 (-) 726 WP_409294748.1 hypothetical protein -
  V1498_RS16435 (V1498_16435) - 3252617..3252805 (+) 189 WP_409294749.1 YjzD family protein -
  V1498_RS16440 (V1498_16440) - 3252871..3253062 (-) 192 WP_409291806.1 YjzC family protein -
  V1498_RS16445 (V1498_16445) argF 3253339..3254298 (-) 960 WP_409294750.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7086.28 Da        Isoelectric Point: 4.6684

>NTDB_id=929421 V1498_RS16420 WP_409294746.1 3250550..3250732(-) (comZ) [Peribacillus sp. SCS-26]
MDQNRNMEFMAIAMKYFPEAKERLDKAGIELSMDLLPHFMDLFQKVMQDAYELGKQDALK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=929421 V1498_RS16420 WP_409294746.1 3250550..3250732(-) (comZ) [Peribacillus sp. SCS-26]
ATGGACCAAAATAGAAACATGGAATTCATGGCCATTGCCATGAAGTATTTTCCTGAAGCCAAGGAAAGGCTGGATAAGGC
TGGAATAGAATTATCCATGGATCTTCTGCCGCATTTTATGGACTTATTCCAAAAGGTGATGCAGGATGCTTACGAGCTTG
GAAAGCAGGATGCACTAAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

60.345

96.667

0.583