Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V1498_RS16325 Genome accession   NZ_CP143542
Coordinates   3229398..3231212 (-) Length   604 a.a.
NCBI ID   WP_409294730.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3224398..3236212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS16290 (V1498_16290) - 3224442..3225236 (-) 795 WP_409294723.1 NAD kinase -
  V1498_RS16295 (V1498_16295) - 3225261..3225893 (-) 633 WP_409294724.1 GTP pyrophosphokinase family protein -
  V1498_RS16300 (V1498_16300) - 3226080..3226655 (+) 576 WP_409294725.1 CYTH domain-containing protein -
  V1498_RS16305 (V1498_16305) - 3226680..3227354 (+) 675 WP_409294726.1 lytic transglycosylase domain-containing protein -
  V1498_RS16310 (V1498_16310) - 3227514..3227918 (+) 405 WP_409294727.1 globin -
  V1498_RS16315 (V1498_16315) - 3227915..3228778 (+) 864 WP_409294728.1 ClpXP adapter SpxH family protein -
  V1498_RS16320 (V1498_16320) - 3229029..3229202 (+) 174 WP_409294729.1 hypothetical protein -
  V1498_RS16325 (V1498_16325) pepF 3229398..3231212 (-) 1815 WP_409294730.1 oligoendopeptidase F Regulator
  V1498_RS16330 (V1498_16330) - 3231331..3232521 (-) 1191 WP_409294731.1 competence protein CoiA -
  V1498_RS16335 (V1498_16335) cls 3232783..3234291 (-) 1509 WP_409294732.1 cardiolipin synthase -
  V1498_RS16340 (V1498_16340) mecA 3234434..3235108 (-) 675 WP_409294733.1 adaptor protein MecA -
  V1498_RS16345 (V1498_16345) spxA 3235484..3235879 (-) 396 WP_409291824.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69360.60 Da        Isoelectric Point: 4.7516

>NTDB_id=929417 V1498_RS16325 WP_409294730.1 3229398..3231212(-) (pepF) [Peribacillus sp. SCS-26]
MSQETTVKSLPARSEIPVNDTWKLEDIFATDKDWETEFQGVKEEIKKADAYKGTLGESPDKLFAALQFQDEIMERLGRLY
TYAHMRYDQDTTNSFYQGFDDRAKTLYTQAASAFSFAVPEILGIDPQTIESYLDEHGELKLYKQALDEINLQRPHVLSAD
QEALLAQASEAMSASQNTFGMLNNADLEFPAIKDEDGETVEITHGRYIRFLESEDRRVREEAFKAVYGTYGKFKNTFAST
LAGTVKKDNFNAQIRNYDSARHAALSANNIPETVYDNLVNTVNDNLSLLHRYVDLRKKVLKLDELHIYDMYTPLVKDVKM
KVSYEEAKEYVINGLAPLGEEYSSILKEGFEKRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYMLKTVDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKSQ
EGEALTSELLTKEYYELNKKYFGTNIVIDDEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKSILEEGEPAVGRYIEFL
KSGSSDYPIEVLKKAGVDMNQAEPIQQACRVFEEKLNEMESLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=929417 V1498_RS16325 WP_409294730.1 3229398..3231212(-) (pepF) [Peribacillus sp. SCS-26]
ATGTCACAGGAAACTACAGTCAAGTCTTTGCCGGCCAGAAGCGAAATACCTGTTAATGATACATGGAAGCTGGAAGATAT
CTTTGCCACTGATAAGGATTGGGAAACTGAATTTCAGGGTGTGAAGGAAGAAATCAAAAAAGCGGATGCCTATAAAGGCA
CATTAGGGGAAAGTCCCGATAAATTGTTTGCAGCCCTTCAATTCCAGGATGAAATAATGGAACGCCTGGGCAGGCTGTAT
ACATATGCTCATATGCGGTATGATCAGGACACCACGAATTCCTTTTACCAGGGATTCGACGACCGGGCCAAGACTTTGTA
TACCCAGGCTGCCAGTGCCTTCTCTTTTGCGGTTCCCGAGATTCTCGGCATTGATCCGCAAACGATCGAAAGCTATCTTG
ATGAGCACGGGGAGCTTAAGCTGTATAAGCAGGCTCTTGATGAAATCAATCTGCAGAGGCCGCATGTCCTTTCCGCAGAC
CAGGAAGCCCTCCTGGCACAGGCGTCAGAGGCTATGTCTGCTTCTCAAAATACGTTTGGCATGCTGAACAATGCCGATCT
CGAATTCCCGGCCATTAAGGATGAAGACGGTGAAACCGTGGAAATTACCCATGGAAGGTATATCCGCTTCCTTGAAAGCG
AGGACCGGAGGGTAAGGGAAGAGGCATTCAAAGCGGTGTACGGTACGTACGGCAAATTCAAGAACACTTTTGCGAGCACA
CTTGCAGGCACGGTGAAGAAAGATAATTTCAACGCGCAGATCCGGAATTATGATTCTGCACGCCATGCCGCACTAAGCGC
CAATAATATCCCTGAGACGGTTTATGATAATCTTGTAAACACAGTCAATGATAATCTTTCCCTGCTCCACCGTTATGTGG
ATCTGCGGAAAAAGGTGCTGAAGCTGGATGAGCTGCACATATATGATATGTATACACCGCTTGTTAAAGATGTGAAAATG
AAGGTATCATACGAAGAAGCAAAAGAATATGTCATCAATGGCCTGGCGCCGCTTGGTGAGGAATACAGCTCAATCCTGAA
GGAAGGGTTTGAAAAACGCTGGGTGGATGTCCACGAAAATAAAGGCAAGCGCAGCGGTGCTTATTCTTCAGGAGCATATG
GGACCAACCCGTATATATTAATGAACTGGCAGGACAATGTGAATAACCTGTTCACCCTGGCCCATGAATTCGGTCACTCG
GTACACAGCTACTATACCAGGAAATCTCAGCCATATCCTTATGGAAATTATTCTATATTTGTTGCGGAAGTGGCTTCCAC
CTGCAATGAAGCGCTGCTCAATGATTATATGCTGAAGACGGTGGATGACGAGAAAAAACGCCTTTACCTTCTTAACCATT
ACCTTGAAGGCTTCAGGGGAACCGTTTTCCGACAGACGATGTTCGCAGAATTCGAGCATCTTATCCATCAAAAATCGCAA
GAGGGTGAAGCGCTGACTTCGGAGCTTCTGACCAAGGAATATTATGAGCTGAACAAGAAGTACTTTGGAACGAATATCGT
CATTGACGATGAAATCGGGCTTGAATGGTCCAGGATCCCGCATTTCTATTACAACTATTATGTATACCAATATGCAACCG
GCTTCAGTGCGGCCACAGCCCTCAGCAAATCCATCCTTGAAGAGGGAGAGCCGGCTGTGGGAAGATATATTGAGTTCCTG
AAGTCCGGAAGCTCTGATTATCCAATCGAAGTTCTGAAAAAAGCAGGAGTCGATATGAATCAGGCGGAACCAATCCAGCA
GGCATGCAGGGTATTTGAAGAAAAGCTGAATGAGATGGAAAGTTTATTGTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.746

97.848

0.487