Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V1498_RS07220 Genome accession   NZ_CP143542
Coordinates   1419850..1421556 (+) Length   568 a.a.
NCBI ID   WP_409297862.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414850..1426556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS07195 (V1498_07195) xseB 1415099..1415329 (+) 231 WP_409297857.1 exodeoxyribonuclease VII small subunit -
  V1498_RS07200 (V1498_07200) - 1415345..1416226 (+) 882 WP_409299191.1 polyprenyl synthetase family protein -
  V1498_RS07205 (V1498_07205) dxs 1416404..1418296 (+) 1893 WP_409297858.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V1498_RS07210 (V1498_07210) - 1418300..1419145 (+) 846 WP_409297860.1 TlyA family RNA methyltransferase -
  V1498_RS07215 (V1498_07215) ahrC 1419382..1419831 (+) 450 WP_409289183.1 transcriptional regulator AhrC/ArgR -
  V1498_RS07220 (V1498_07220) recN 1419850..1421556 (+) 1707 WP_409297862.1 DNA repair protein RecN Machinery gene
  V1498_RS07225 (V1498_07225) - 1421727..1422518 (-) 792 WP_409297864.1 spore coat protein -
  V1498_RS07230 (V1498_07230) spoIVB 1422950..1424245 (+) 1296 WP_409297865.1 SpoIVB peptidase -
  V1498_RS07235 (V1498_07235) spo0A 1424470..1425261 (+) 792 WP_409297867.1 sporulation transcription factor Spo0A -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 63527.78 Da        Isoelectric Point: 4.9846

>NTDB_id=929406 V1498_RS07220 WP_409297862.1 1419850..1421556(+) (recN) [Peribacillus sp. SCS-26]
MLAELSIKNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGETKAELEGLFQIDDENHPIHAK
AAQFGVDISDGMVVLRRDISSSGKSVCRVNGKLVTIAILREIGSSLIDIHSQHESQELMDPDHHLPLLDYFGGAEIRDAL
LEYQELYKRYEASARQLKSLNQDEQQMAHRLDLIQFQFDEINKAALQIKEDDELTEEKQKISNFERIHEALQSAYHTLGG
EQRGLDWVGQAVSQLEEAASLDEDYSGIQENAANSFYILEDVVSSIRNQLDSLEFDSERLDFIESRLNEINGLKRKYGRT
VEDILEYAAGIEEEIETIQNRETHIAKIEKELSSIRKDLLVEAKNLSQLRQKYAKKLTVQIHKELKDLYMEKTVFEVHFH
HKASGQDGPEGIQRSGMDHVEFYISTNPGEPLKPLAKIASGGELSRIILALKNIFSEHQGVTSIIFDEVDTGVSGRVAQS
MAEKIYRVSIGSQVLCISHLPQVAAMADTHLFISKQTKSGRTKTKVDPLSEEEKINEIGRMISGVEITELTKEHAKELLH
LASQIKSA

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=929406 V1498_RS07220 WP_409297862.1 1419850..1421556(+) (recN) [Peribacillus sp. SCS-26]
TTGCTAGCGGAATTGTCGATTAAAAACTTTGCAATAATTGAAGCCCTTTCTGTTTCTTTCGAAAAGGGCTTGACTGTTTT
GACCGGGGAGACTGGTGCGGGTAAGTCCATCATCATAGATGCCATTAGTCTCCTTGTAGGAGGGAGAGGCTCTTCTGAAT
TTGTCCGGCACGGAGAGACGAAGGCGGAGCTTGAGGGTCTGTTTCAGATTGATGACGAAAATCATCCCATTCATGCGAAA
GCAGCGCAATTCGGCGTGGATATCAGCGATGGCATGGTTGTTCTCCGCAGGGATATATCAAGCTCAGGAAAAAGTGTCTG
CCGGGTAAATGGCAAGCTTGTGACCATTGCGATTTTAAGGGAAATAGGCAGCTCGCTCATCGATATACACAGCCAGCATG
AAAGCCAGGAGCTTATGGACCCGGATCACCACCTGCCTCTCCTCGATTATTTTGGGGGTGCTGAGATAAGAGATGCACTT
CTGGAATATCAGGAATTGTATAAAAGATACGAAGCCAGTGCCAGACAGCTTAAGAGCCTGAATCAGGATGAGCAGCAGAT
GGCACACAGGCTGGATCTGATTCAATTTCAGTTCGATGAGATCAATAAGGCGGCGCTCCAGATCAAAGAGGATGATGAGC
TTACAGAGGAAAAGCAGAAAATATCTAACTTTGAGAGGATCCATGAAGCTCTTCAGTCTGCCTATCATACACTTGGCGGG
GAGCAGAGGGGCCTTGACTGGGTCGGCCAGGCTGTCAGCCAGCTTGAAGAAGCGGCATCACTCGATGAGGATTACAGCGG
CATTCAGGAAAATGCAGCTAACAGTTTCTACATATTGGAGGATGTTGTTTCGTCCATCAGGAACCAGCTGGATTCCCTGG
AATTTGATTCGGAACGCCTTGATTTCATTGAAAGCAGGCTTAATGAAATCAATGGCCTGAAACGAAAATACGGCAGGACT
GTGGAAGATATTCTTGAGTATGCGGCCGGAATTGAAGAAGAAATCGAAACCATCCAAAATCGTGAAACGCATATCGCGAA
AATTGAGAAGGAGCTGTCTTCCATCCGGAAAGACCTTCTGGTTGAAGCGAAGAATCTCTCCCAGCTCCGCCAAAAATATG
CTAAAAAGCTCACTGTGCAGATTCACAAGGAACTGAAGGATTTATATATGGAGAAAACAGTTTTTGAAGTCCATTTTCAT
CATAAAGCATCCGGGCAGGATGGGCCTGAAGGAATTCAAAGAAGCGGAATGGATCATGTGGAATTTTACATTTCCACAAA
CCCCGGGGAGCCTTTGAAGCCGCTCGCGAAGATTGCATCAGGCGGGGAGCTTTCAAGGATCATCCTGGCACTGAAAAACA
TTTTTTCTGAACATCAGGGTGTCACCTCCATCATCTTTGATGAAGTGGATACCGGTGTCAGCGGCCGTGTGGCCCAGTCG
ATGGCTGAAAAGATATACAGAGTTTCCATTGGATCTCAGGTGCTCTGCATATCGCATCTGCCGCAGGTAGCTGCGATGGC
CGATACCCATCTGTTCATCTCCAAGCAGACAAAGAGCGGGCGGACCAAGACAAAAGTCGATCCGCTGAGTGAAGAAGAAA
AAATCAATGAAATCGGCCGGATGATTTCAGGCGTTGAAATCACAGAGCTGACCAAAGAACATGCAAAAGAACTGCTGCAC
CTGGCAAGCCAGATTAAAAGCGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.368

100

0.643