Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V1498_RS00530 Genome accession   NZ_CP143542
Coordinates   104693..106081 (+) Length   462 a.a.
NCBI ID   WP_409296441.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99693..111081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS00510 (V1498_00510) - 99930..100391 (+) 462 WP_409296437.1 CtsR family transcriptional regulator -
  V1498_RS00515 (V1498_00515) - 100420..100983 (+) 564 WP_409296438.1 UvrB/UvrC motif-containing protein -
  V1498_RS00520 (V1498_00520) - 100980..102047 (+) 1068 WP_409296439.1 protein arginine kinase -
  V1498_RS00525 (V1498_00525) clpC 102070..104505 (+) 2436 WP_409296440.1 ATP-dependent protease ATP-binding subunit ClpC -
  V1498_RS00530 (V1498_00530) radA 104693..106081 (+) 1389 WP_409296441.1 DNA repair protein RadA Machinery gene
  V1498_RS00535 (V1498_00535) disA 106084..107157 (+) 1074 WP_409296442.1 DNA integrity scanning diadenylate cyclase DisA -
  V1498_RS00540 (V1498_00540) - 107354..108445 (+) 1092 WP_409296443.1 PIN/TRAM domain-containing protein -
  V1498_RS00545 (V1498_00545) ispD 108466..109164 (+) 699 WP_409296444.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  V1498_RS00550 (V1498_00550) ispF 109179..109655 (+) 477 WP_409296445.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50015.53 Da        Isoelectric Point: 7.0710

>NTDB_id=929394 V1498_RS00530 WP_409296441.1 104693..106081(+) (radA) [Peribacillus sp. SCS-26]
MAKKKTKFICGSCGYESAKWMGKCPGCGDWNKMVEEVEIVKPARRGAFTHSEGKDFGGERQKAAPITSIATIQEPRITTD
LIELNRVLGGGIVHGSLVLIGGDPGIGKSTLLLQVSSQLANKEKKVLYISGEESVKQTKLRSERLGVTSANLFVYSETDM
DYIGQAIKEVAPDLVIIDSIQTVFNAEVTSAPGSVSQVRECTAQLMRIAKTNGIAIFIVGHVTKEGSIAGPRLLEHMVDT
VLYFEGERHHTYRIVRAVKNRFGSTNEMGIFEMKENGLEEVENPSEIFLEERSQGGSGSTVVASMEGTRPVLVEIQALIS
PTSFGTPRRMATGTDHNRISLIMAVLEKRVGMLLQNQDAYLKVAGGIKLDEPAIDLAIAVSIASSFRDKPTRQTDCLIGE
VGLTGEVRRVSRIEQRVQEAVKLGFDRIILPANNLGGWSVPKGVELVGVSTISEALQCALGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=929394 V1498_RS00530 WP_409296441.1 104693..106081(+) (radA) [Peribacillus sp. SCS-26]
ATGGCTAAGAAAAAAACAAAATTCATCTGCGGCTCCTGCGGCTATGAATCTGCCAAATGGATGGGAAAATGCCCAGGGTG
CGGAGATTGGAATAAAATGGTTGAGGAGGTGGAGATTGTTAAGCCTGCAAGAAGAGGGGCATTCACCCACTCAGAAGGCA
AAGATTTTGGCGGTGAACGCCAGAAGGCAGCGCCGATCACCTCCATTGCGACCATTCAGGAACCAAGGATCACCACGGAT
TTAATTGAATTGAACCGTGTCCTCGGCGGGGGCATTGTACATGGATCCCTTGTACTGATTGGAGGAGACCCGGGTATCGG
AAAATCCACCCTGCTCCTTCAGGTATCATCACAGCTCGCCAATAAAGAGAAGAAGGTTTTATATATATCAGGCGAGGAAT
CTGTCAAGCAGACGAAGCTTAGGTCAGAGCGTCTTGGGGTGACTTCGGCCAATTTATTTGTCTATTCAGAGACGGATATG
GATTATATCGGCCAGGCCATCAAAGAAGTGGCACCTGACCTGGTTATCATCGATTCCATCCAGACTGTATTCAATGCTGA
GGTCACTTCGGCGCCGGGAAGCGTATCACAGGTACGTGAATGTACAGCACAATTGATGAGAATTGCGAAAACCAACGGAA
TTGCGATTTTCATTGTGGGTCATGTGACAAAGGAAGGATCGATTGCCGGCCCGCGGCTGCTTGAACACATGGTGGATACA
GTCCTTTACTTTGAAGGCGAAAGACACCATACCTACAGGATTGTCAGGGCTGTAAAAAACAGATTTGGCTCCACCAACGA
AATGGGCATTTTTGAAATGAAGGAAAACGGACTGGAGGAAGTGGAAAACCCGTCCGAGATTTTTCTTGAAGAGAGATCCC
AGGGAGGCTCTGGTTCGACGGTCGTGGCTTCCATGGAGGGGACGAGGCCGGTACTTGTGGAAATCCAGGCCCTCATTTCA
CCCACGAGTTTCGGGACCCCAAGGAGGATGGCGACCGGAACGGACCATAACCGGATATCCCTCATCATGGCCGTCCTGGA
AAAAAGAGTGGGCATGCTGCTTCAAAACCAGGACGCGTATCTCAAGGTGGCGGGAGGCATCAAGCTGGATGAGCCGGCCA
TTGATCTTGCGATTGCAGTGAGCATCGCATCAAGCTTCAGGGATAAGCCTACCCGTCAGACAGACTGCCTGATCGGAGAA
GTGGGCCTTACAGGGGAAGTGAGGAGGGTATCCCGGATAGAACAAAGAGTACAGGAAGCAGTAAAGCTTGGATTTGACCG
CATCATTCTTCCGGCGAATAATCTCGGTGGCTGGAGCGTGCCAAAGGGTGTGGAGCTTGTTGGGGTATCAACTATATCCG
AGGCCCTTCAATGCGCATTAGGAGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-226)

Subunit ChlI of Mg-chelatase (ChlI)

(367-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.946

100

0.751
  radA Streptococcus pneumoniae Rx1

61.22

99.351

0.608
  radA Streptococcus pneumoniae D39

61.22

99.351

0.608
  radA Streptococcus pneumoniae R6

61.22

99.351

0.608
  radA Streptococcus pneumoniae TIGR4

61.22

99.351

0.608
  radA Streptococcus mitis NCTC 12261

61.22

99.351

0.608
  radA Streptococcus mitis SK321

61.002

99.351

0.606