Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V1680_RS14215 Genome accession   NZ_CP143534
Coordinates   3175030..3176415 (-) Length   461 a.a.
NCBI ID   WP_003464589.1    Uniprot ID   B1BV32
Organism   Clostridium perfringens strain CQ92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3170030..3181415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1680_RS14195 (V1680_14195) ispD 3171402..3172079 (-) 678 WP_061429466.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  V1680_RS14200 (V1680_14200) - 3172093..3173199 (-) 1107 WP_061429245.1 PIN/TRAM domain-containing protein -
  V1680_RS14205 (V1680_14205) - 3173511..3173912 (+) 402 WP_003459340.1 hypothetical protein -
  V1680_RS14210 (V1680_14210) disA 3173946..3175010 (-) 1065 WP_003452233.1 DNA integrity scanning diadenylate cyclase DisA -
  V1680_RS14215 (V1680_14215) radA 3175030..3176415 (-) 1386 WP_003464589.1 DNA repair protein RadA Machinery gene
  V1680_RS14220 (V1680_14220) nagB 3176643..3177371 (-) 729 WP_003472813.1 glucosamine-6-phosphate deaminase -
  V1680_RS14225 (V1680_14225) - 3177368..3178090 (-) 723 WP_011010906.1 GntR family transcriptional regulator -
  V1680_RS14230 (V1680_14230) - 3178290..3178454 (+) 165 WP_003459343.1 hypothetical protein -
  V1680_RS14235 (V1680_14235) - 3178548..3178775 (+) 228 WP_003452255.1 glutaredoxin family protein -
  V1680_RS14240 (V1680_14240) - 3178899..3180347 (-) 1449 WP_003459369.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  V1680_RS14245 (V1680_14245) - 3180364..3180597 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50680.61 Da        Isoelectric Point: 7.9111

>NTDB_id=929342 V1680_RS14215 WP_003464589.1 3175030..3176415(-) (radA) [Clostridium perfringens strain CQ92]
MKKYGVGKVAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDT
GIGELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETN
LDVIEAYIDKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVD
TVLSFEGERTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLA
SETKAVMPRRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVV
GEVGLTGEIRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=929342 V1680_RS14215 WP_003464589.1 3175030..3176415(-) (radA) [Clostridium perfringens strain CQ92]
ATGAAGAAATATGGAGTTGGTAAAGTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAA
ATGGATGGGGAAATGTCCAGAATGTAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTT
CTCCTAAGGTTGAAAGACAAATTGGTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACT
GGAATTGGTGAATTAAATAGAGTATTAGGTGGAGGGCTTGTTAAGGGGTCACTTACACTTATATCTGGTGATCCTGGAAT
AGGTAAATCTACACTTCTTTTACAAACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAG
AATCAGAAGAACAAATAAAAATAAGAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAAT
CTTGATGTAATAGAAGCATATATAGATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGA
AACAGTTTCTTCAGCACCAGGAAGTGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAA
ATATTCCTTTATTTATAGTTGCTCATGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTTGAT
ACTGTATTATCCTTTGAAGGGGAAAGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGC
TGAAATAGGTGTTTTTGAAATGCGTGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTTTTAGAGGACACTA
GTTTTAATCAAGAAGGGTCAGTTGTAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCA
TCTGAAACAAAAGCAGTTATGCCTAGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATT
AGAAAAAAAATTAAGAGTTCCTTTTTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTA
CAGCAGACTTAGGAATTGCTATTTCACTTGTATCCTCTGTTAAAGGTAAAGCAGCTAGCTTAGAAAAATTAGTTGTTGTA
GGCGAGGTTGGGTTAACAGGTGAAATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATT
TTTAAATGCAGTTGTTCCTTATAGAAGTTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAA
GGGAAGCAATAGGAAAGATATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(351-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1BV32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

98.265

0.49
  radA Streptococcus pneumoniae Rx1

47.357

98.482

0.466
  radA Streptococcus pneumoniae D39

47.357

98.482

0.466
  radA Streptococcus pneumoniae R6

47.357

98.482

0.466
  radA Streptococcus pneumoniae TIGR4

47.357

98.482

0.466
  radA Streptococcus mitis SK321

47.137

98.482

0.464
  radA Streptococcus mitis NCTC 12261

47.137

98.482

0.464