Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V1687_RS19510 Genome accession   NZ_CP143524
Coordinates   4123388..4124023 (-) Length   211 a.a.
NCBI ID   WP_031322710.1    Uniprot ID   A0A1X1A0J8
Organism   Pseudomonas putida strain MT178     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4118388..4129023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1687_RS19480 (V1687_19480) murB 4119485..4120504 (-) 1020 WP_021784974.1 UDP-N-acetylmuramate dehydrogenase -
  V1687_RS19485 (V1687_19485) - 4120501..4120965 (-) 465 WP_019752229.1 low molecular weight protein-tyrosine-phosphatase -
  V1687_RS19490 (V1687_19490) kdsB 4120965..4121729 (-) 765 WP_021784973.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V1687_RS19495 (V1687_19495) - 4121726..4121911 (-) 186 WP_003247142.1 Trm112 family protein -
  V1687_RS19500 (V1687_19500) lpxK 4121956..4122957 (-) 1002 WP_021784972.1 tetraacyldisaccharide 4'-kinase -
  V1687_RS19505 (V1687_19505) - 4122957..4123391 (-) 435 WP_021784971.1 ExbD/TolR family protein -
  V1687_RS19510 (V1687_19510) exbB 4123388..4124023 (-) 636 WP_031322710.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V1687_RS19515 (V1687_19515) comA 4125200..4127413 (-) 2214 WP_021784804.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V1687_RS19520 (V1687_19520) - 4127556..4128062 (+) 507 Protein_3841 DUF2062 domain-containing protein -
  V1687_RS19525 (V1687_19525) - 4128072..4128851 (-) 780 WP_003247128.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22857.14 Da        Isoelectric Point: 7.3616

>NTDB_id=929315 V1687_RS19510 WP_031322710.1 4123388..4124023(-) (exbB) [Pseudomonas putida strain MT178]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=929315 V1687_RS19510 WP_031322710.1 4123388..4124023(-) (exbB) [Pseudomonas putida strain MT178]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGGCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATTTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGTACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGTATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTACTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGTCGTATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGGGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1A0J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.905

99.526

0.815