Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB9G19_RS02465 Genome accession   NZ_CP166913
Coordinates   540246..540971 (-) Length   241 a.a.
NCBI ID   WP_033887723.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YK1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535246..545971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9G19_RS02440 (AB9G19_02440) - 535718..536233 (+) 516 WP_019486005.1 glycine cleavage system protein R -
  AB9G19_RS02445 (AB9G19_02445) rarD 536923..537819 (-) 897 WP_003103301.1 EamA family transporter RarD -
  AB9G19_RS02450 (AB9G19_02450) - 538022..538996 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  AB9G19_RS02455 (AB9G19_02455) - 539058..539816 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  AB9G19_RS02460 (AB9G19_02460) - 539884..540204 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  AB9G19_RS02465 (AB9G19_02465) comF 540246..540971 (-) 726 WP_033887723.1 ComF family protein Machinery gene
  AB9G19_RS02470 (AB9G19_02470) - 541110..541403 (-) 294 WP_003084806.1 hypothetical protein -
  AB9G19_RS02475 (AB9G19_02475) - 541457..542383 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  AB9G19_RS02480 (AB9G19_02480) - 542501..543259 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  AB9G19_RS02485 (AB9G19_02485) - 543336..543584 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  AB9G19_RS02490 (AB9G19_02490) - 543595..544971 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  AB9G19_RS02495 (AB9G19_02495) - 544973..545851 (+) 879 WP_023081616.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27045.57 Da        Isoelectric Point: 11.0325

>NTDB_id=929261 AB9G19_RS02465 WP_033887723.1 540246..540971(-) (comF) [Pseudomonas aeruginosa strain YK1]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQLYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=929261 AB9G19_RS02465 WP_033887723.1 540246..540971(-) (comF) [Pseudomonas aeruginosa strain YK1]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACTCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

38.034

97.095

0.369