Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACA109_RS09010 Genome accession   NZ_CP166872
Coordinates   1770493..1771575 (-) Length   360 a.a.
NCBI ID   WP_000370986.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 24EBSta0529     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765493..1776575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA109_RS08990 (ACA109_08990) - 1766108..1766206 (-) 99 WP_031927302.1 hypothetical protein -
  ACA109_RS08995 (ACA109_08995) secA 1766248..1768779 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACA109_RS09000 (ACA109_09000) hpf 1769193..1769765 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACA109_RS09005 (ACA109_09005) - 1769826..1770500 (-) 675 WP_371256602.1 ComF family protein -
  ACA109_RS09010 (ACA109_09010) comFA 1770493..1771575 (-) 1083 WP_000370986.1 DEAD/DEAH box helicase Machinery gene
  ACA109_RS09015 (ACA109_09015) fakB1 1771939..1772805 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  ACA109_RS09020 (ACA109_09020) - 1772949..1773590 (+) 642 WP_162646754.1 YigZ family protein -
  ACA109_RS09025 (ACA109_09025) - 1773762..1774817 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACA109_RS09030 (ACA109_09030) - 1775135..1776205 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42055.60 Da        Isoelectric Point: 9.8309

>NTDB_id=929233 ACA109_RS09010 WP_000370986.1 1770493..1771575(-) (comFA) [Staphylococcus aureus strain 24EBSta0529]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=929233 ACA109_RS09010 WP_000370986.1 1770493..1771575(-) (comFA) [Staphylococcus aureus strain 24EBSta0529]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367