Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACA109_RS06385 Genome accession   NZ_CP166872
Coordinates   1254667..1255818 (-) Length   383 a.a.
NCBI ID   WP_197840090.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 24EBSta0529     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1249667..1260818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA109_RS06365 (ACA109_06365) - 1250440..1250655 (+) 216 WP_000026308.1 hypothetical protein -
  ACA109_RS06370 (ACA109_06370) - 1250969..1251277 (+) 309 Protein_1218 transposase -
  ACA109_RS06375 (ACA109_06375) rny 1251546..1253105 (-) 1560 WP_001050913.1 ribonuclease Y -
  ACA109_RS06380 (ACA109_06380) recA 1253459..1254502 (-) 1044 WP_000368166.1 recombinase RecA -
  ACA109_RS06385 (ACA109_06385) cinA 1254667..1255818 (-) 1152 WP_197840090.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACA109_RS06390 (ACA109_06390) pgsA 1256045..1256623 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACA109_RS06395 (ACA109_06395) - 1256657..1257049 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  ACA109_RS06400 (ACA109_06400) - 1257068..1257895 (-) 828 WP_000214890.1 YmfK family protein -
  ACA109_RS06405 (ACA109_06405) ymfI 1258000..1258704 (-) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  ACA109_RS06410 (ACA109_06410) yfmH 1258704..1259990 (-) 1287 WP_000664769.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43189.48 Da        Isoelectric Point: 6.1914

>NTDB_id=929210 ACA109_RS06385 WP_197840090.1 1254667..1255818(-) (cinA) [Staphylococcus aureus strain 24EBSta0529]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=929210 ACA109_RS06385 WP_197840090.1 1254667..1255818(-) (cinA) [Staphylococcus aureus strain 24EBSta0529]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCCAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433