Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB3239_RS19325 Genome accession   NZ_CP166831
Coordinates   3723847..3724980 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3718847..3729980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS19285 (AB3239_19285) ywnA 3719011..3719412 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  AB3239_RS19290 (AB3239_19290) ureC 3719547..3721256 (-) 1710 WP_003243090.1 urease subunit alpha -
  AB3239_RS19295 (AB3239_19295) ureB 3721253..3721627 (-) 375 WP_003227726.1 urease subunit beta -
  AB3239_RS19300 (AB3239_19300) ureA 3721624..3721941 (-) 318 WP_003227724.1 urease subunit gamma -
  AB3239_RS19305 (AB3239_19305) - 3722136..3722294 (-) 159 WP_142388230.1 hypothetical protein -
  AB3239_RS19310 (AB3239_19310) - 3722473..3722655 (-) 183 WP_370957045.1 hypothetical protein -
  AB3239_RS19315 (AB3239_19315) csbD 3722953..3723141 (-) 189 WP_003227718.1 stress response protein CsbD -
  AB3239_RS19320 (AB3239_19320) - 3723214..3723693 (-) 480 WP_003244390.1 hypothetical protein -
  AB3239_RS19325 (AB3239_19325) rapC 3723847..3724980 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  AB3239_RS19330 (AB3239_19330) moaA 3725173..3726198 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  AB3239_RS19335 (AB3239_19335) fdhD 3726214..3727002 (-) 789 WP_370957046.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  AB3239_RS19340 (AB3239_19340) - 3727248..3727409 (-) 162 WP_021480806.1 hypothetical protein -
  AB3239_RS19345 (AB3239_19345) ywmD 3727504..3728178 (-) 675 WP_370957047.1 VWA domain-containing protein -
  AB3239_RS19350 (AB3239_19350) - 3728231..3728371 (-) 141 WP_014478246.1 hypothetical protein -
  AB3239_RS19355 (AB3239_19355) ywmC 3728502..3729185 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=929149 AB3239_RS19325 WP_014478242.1 3723847..3724980(-) (rapC) [Bacillus subtilis strain TE3T-UV25]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=929149 AB3239_RS19325 WP_014478242.1 3723847..3724980(-) (rapC) [Bacillus subtilis strain TE3T-UV25]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424