Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AB3239_RS15755 Genome accession   NZ_CP166831
Coordinates   3016141..3016851 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3011141..3021851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS15735 (AB3239_15735) cysK 3011192..3012127 (+) 936 WP_003229237.1 cysteine synthase A -
  AB3239_RS15740 (AB3239_15740) pepV 3012161..3013552 (-) 1392 WP_021480325.1 dipeptidase PepV -
  AB3239_RS15745 (AB3239_15745) pbuO 3013649..3014947 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  AB3239_RS15750 (AB3239_15750) ythQ 3014987..3016144 (-) 1158 WP_172850156.1 ABC transporter permease -
  AB3239_RS15755 (AB3239_15755) pptA 3016141..3016851 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  AB3239_RS15760 (AB3239_15760) ytzE 3017141..3017362 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  AB3239_RS15765 (AB3239_15765) rsuA 3017484..3018203 (-) 720 WP_014480587.1 pseudouridine synthase -
  AB3239_RS15770 (AB3239_15770) murJ 3018272..3019906 (-) 1635 WP_370956929.1 lipid II flippase MurJ -
  AB3239_RS15775 (AB3239_15775) ytfP 3020109..3021371 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=929129 AB3239_RS15755 WP_015714539.1 3016141..3016851(-) (pptA) [Bacillus subtilis strain TE3T-UV25]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=929129 AB3239_RS15755 WP_015714539.1 3016141..3016851(-) (pptA) [Bacillus subtilis strain TE3T-UV25]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432