Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB3239_RS06950 Genome accession   NZ_CP166831
Coordinates   1325450..1326586 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320450..1331586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS06930 (AB3239_06930) uxaA 1320901..1322394 (+) 1494 WP_302896955.1 UxaA family hydrolase -
  AB3239_RS06935 (AB3239_06935) yjnA 1322433..1323197 (-) 765 WP_370957356.1 sulfite exporter TauE/SafE family protein -
  AB3239_RS06940 (AB3239_06940) bstD 1323421..1323885 (-) 465 WP_014479541.1 DinB family protein -
  AB3239_RS06945 (AB3239_06945) yjoB 1324034..1325305 (+) 1272 WP_072174219.1 ATPase YjoB -
  AB3239_RS06950 (AB3239_06950) rapC 1325450..1326586 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  AB3239_RS06955 (AB3239_06955) phrA 1326576..1326710 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AB3239_RS06960 (AB3239_06960) yjpA 1326741..1326998 (-) 258 WP_003232731.1 YciI family protein -
  AB3239_RS06965 (AB3239_06965) xlyB 1327119..1328072 (+) 954 WP_032677396.1 N-acetylmuramoyl-L-alanine amidase -
  AB3239_RS06970 (AB3239_06970) yjqA 1328112..1328489 (-) 378 WP_014479546.1 PH domain-containing protein -
  AB3239_RS06975 (AB3239_06975) pghB 1328594..1329196 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  AB3239_RS06980 (AB3239_06980) xpdC 1329273..1330109 (+) 837 WP_370957357.1 manganese catalase family protein -
  AB3239_RS06985 (AB3239_06985) xkdA 1330153..1330749 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  AB3239_RS06990 (AB3239_06990) xre 1330912..1331253 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=929064 AB3239_RS06950 WP_015252291.1 1325450..1326586(+) (rapC) [Bacillus subtilis strain TE3T-UV25]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=929064 AB3239_RS06950 WP_015252291.1 1325450..1326586(+) (rapC) [Bacillus subtilis strain TE3T-UV25]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTATATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418