Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AB3239_RS04425 Genome accession   NZ_CP166831
Coordinates   860873..861589 (+) Length   238 a.a.
NCBI ID   WP_163135792.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 855873..866589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS04410 (AB3239_04410) yfkQ 855954..857495 (-) 1542 WP_370957259.1 spore germination protein -
  AB3239_RS04415 (AB3239_04415) treP 857684..859096 (+) 1413 WP_370957260.1 PTS system trehalose-specific EIIBC component -
  AB3239_RS04420 (AB3239_04420) treC 859167..860852 (+) 1686 WP_370957261.1 alpha,alpha-phosphotrehalase -
  AB3239_RS04425 (AB3239_04425) treR 860873..861589 (+) 717 WP_163135792.1 trehalose operon repressor Regulator
  AB3239_RS04430 (AB3239_04430) hypO 861729..862394 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27842.80 Da        Isoelectric Point: 6.9167

>NTDB_id=929039 AB3239_RS04425 WP_163135792.1 860873..861589(+) (treR) [Bacillus subtilis strain TE3T-UV25]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICEDS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=929039 AB3239_RS04425 WP_163135792.1 860873..861589(+) (treR) [Bacillus subtilis strain TE3T-UV25]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAGACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416