Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AB3239_RS02405 Genome accession   NZ_CP166831
Coordinates   471090..471524 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain TE3T-UV25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 466090..476524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS02375 (AB3239_02375) ydaD 466737..467597 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  AB3239_RS02380 (AB3239_02380) lyxE 467613..468116 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AB3239_RS02385 (AB3239_02385) ydaF 468202..468753 (+) 552 WP_003234398.1 GNAT family N-acetyltransferase -
  AB3239_RS02390 (AB3239_02390) ydaG 468831..469253 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB3239_RS02395 (AB3239_02395) amj 469761..470570 (+) 810 WP_015715258.1 lipid II flippase Amj -
  AB3239_RS02400 (AB3239_02400) ydzA 470615..470905 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  AB3239_RS02405 (AB3239_02405) lrpC 471090..471524 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AB3239_RS02410 (AB3239_02410) topB 471589..473772 (+) 2184 WP_064671959.1 DNA topoisomerase III -
  AB3239_RS02415 (AB3239_02415) ephJ 473975..475063 (+) 1089 WP_370957177.1 lipoprotein YdaJ -
  AB3239_RS02420 (AB3239_02420) epsK 475044..475895 (+) 852 WP_021481723.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=929035 AB3239_RS02405 WP_003246585.1 471090..471524(+) (lrpC) [Bacillus subtilis strain TE3T-UV25]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=929035 AB3239_RS02405 WP_003246585.1 471090..471524(+) (lrpC) [Bacillus subtilis strain TE3T-UV25]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1