Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VR487_RS05820 Genome accession   NZ_CP143431
Coordinates   1323189..1324256 (+) Length   355 a.a.
NCBI ID   WP_105251812.1    Uniprot ID   -
Organism   Shewanella oncorhynchi strain B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1318189..1329256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR487_RS05810 (VR487_05810) rpoS 1319103..1320083 (+) 981 WP_028761361.1 RNA polymerase sigma factor RpoS -
  VR487_RS05815 (VR487_05815) mutS 1320216..1322786 (-) 2571 WP_330148239.1 DNA mismatch repair protein MutS -
  VR487_RS05820 (VR487_05820) recA 1323189..1324256 (+) 1068 WP_105251812.1 recombinase RecA Machinery gene
  VR487_RS05825 (VR487_05825) - 1324274..1324744 (+) 471 WP_413728874.1 regulatory protein RecX -
  VR487_RS05830 (VR487_05830) alaS 1325064..1327688 (+) 2625 WP_263195720.1 alanine--tRNA ligase -
  VR487_RS05835 (VR487_05835) - 1327698..1328954 (+) 1257 WP_330148241.1 aspartate kinase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37926.45 Da        Isoelectric Point: 4.9553

>NTDB_id=929035 VR487_RS05820 WP_105251812.1 1323189..1324256(+) (recA) [Shewanella oncorhynchi strain B]
MKVDPNKEKALAAVLIQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSALAAKADDSTEDNIDLETGEVF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=929035 VR487_RS05820 WP_105251812.1 1323189..1324256(+) (recA) [Shewanella oncorhynchi strain B]
ATGAAGGTCGATCCAAATAAAGAGAAAGCACTTGCTGCGGTATTGATCCAAATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGATCGCTCTATGGATGTTGAGACCATTTCTACCGGTTCTCTGTCTCTGGATGTTGCTTTAGGTG
CTGGCGGTTTGCCAATGGGTCGTATCGTTGAGATCTATGGTCCTGAATCATCAGGTAAAACAACACTGACTTTAGAAGTG
ATTGCGGCAGCGCAACGTGAAGGCAAAACCTGTGCCTTTATCGATGCAGAGCATGCACTCGACCCTATTTATGCTAAAAA
ATTGGGCGTAGATATTGATAACCTGCTGTGTTCACAACCGGATACCGGCGAGCAAGCGCTTGAGATTTGTGATGCTTTAA
CTCGTTCAGGCGCTGTTGACGTTATCGTAGTTGACTCAGTGGCGGCATTAACGCCTAAAGCTGAAATCGAAGGCGAAATT
GGTGATTCTCACATGGGCTTAGCGGCGCGTATGATGAGCCAAGCCATGCGTAAACTTGCGGGTAACTTAAAGCAATCTAA
CACCTTACTTATCTTCATCAACCAAATTCGGATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACTACAACCGGTGGTA
ACGCGCTGAAGTTTTATGCTTCTGTTCGTTTAGACATTCGCCGCACTGGTGCCATTAAAGACGGCGATGAAGTGGTCGGT
AACGAAACTCGCGTTAAAGTGGTGAAAAACAAGGTTGCAGCGCCGTTTAAGCAAGCTGAGTTCCAAATCCTTTATGGTCA
AGGTATTAACCGTACTGGCGAGTTAGTTGACTTAGGCGTAGCCCATAAGTTGATTGAAAAAGCGGGTGCTTGGTACAGCT
ATAAAGGTGATAAAATTGGCCAAGGTCGTGCTAATGCTGGCAAATATCTGACTGAAAACCCAGCTATTGCTGCTGAAATT
GACAAGACGCTACGTGAGTTGCTTTTGAGTAATCCGAGTGCCTTGGCTGCCAAAGCTGATGATAGTACTGAGGACAATAT
TGATTTAGAGACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.25

99.155

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.25

99.155

0.806
  recA Pseudomonas stutzeri DSM 10701

74.924

92.113

0.69
  recA Acinetobacter baylyi ADP1

70.317

97.746

0.687
  recA Glaesserella parasuis strain SC1401

70.029

97.746

0.685
  recA Acinetobacter baumannii D1279779

69.054

98.31

0.679
  recA Neisseria gonorrhoeae MS11

65.903

98.31

0.648
  recA Neisseria gonorrhoeae MS11

65.903

98.31

0.648
  recA Neisseria gonorrhoeae strain FA1090

65.903

98.31

0.648
  recA Ralstonia pseudosolanacearum GMI1000

69.207

92.394

0.639
  recA Streptococcus mitis SK321

59.229

100

0.606
  recA Streptococcus pneumoniae D39

63.72

92.394

0.589
  recA Streptococcus pyogenes NZ131

58.056

100

0.589
  recA Streptococcus pneumoniae TIGR4

63.72

92.394

0.589
  recA Streptococcus pneumoniae R6

63.72

92.394

0.589
  recA Streptococcus pneumoniae Rx1

63.72

92.394

0.589
  recA Streptococcus mitis NCTC 12261

63.11

92.394

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

93.803

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.268

0.569
  recA Streptococcus mutans UA159

61.585

92.394

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.423

0.566
  recA Helicobacter pylori strain NCTC11637

60.542

93.521

0.566
  recA Helicobacter pylori 26695

60.241

93.521

0.563
  recA Lactococcus lactis subsp. cremoris KW2

60.061

92.394

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

89.859

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.27

88.732

0.544