Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IFU33_RS16550 Genome accession   NZ_CP143418
Coordinates   3494315..3495697 (-) Length   460 a.a.
NCBI ID   WP_010253610.1    Uniprot ID   -
Organism   Pantoea agglomerans strain CFBP13600     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3489315..3500697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFU33_RS16525 (IFU33_16525) - 3490090..3490254 (+) 165 WP_109652447.1 YhfG family protein -
  IFU33_RS16530 (IFU33_16530) - 3490267..3490869 (+) 603 WP_192034203.1 putative adenosine monophosphate-protein transferase Fic -
  IFU33_RS16535 (IFU33_16535) - 3490850..3491746 (-) 897 WP_010253616.1 LysR family transcriptional regulator -
  IFU33_RS16540 (IFU33_16540) - 3491951..3492952 (+) 1002 WP_033756486.1 zinc-binding alcohol dehydrogenase family protein -
  IFU33_RS16545 (IFU33_16545) nadR 3492998..3494239 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IFU33_RS16550 (IFU33_16550) radA 3494315..3495697 (-) 1383 WP_010253610.1 DNA repair protein RadA Machinery gene
  IFU33_RS16555 (IFU33_16555) serB 3495711..3496688 (-) 978 WP_192072974.1 phosphoserine phosphatase -
  IFU33_RS16560 (IFU33_16560) - 3496796..3497446 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  IFU33_RS16565 (IFU33_16565) yjjG 3498111..3498791 (-) 681 WP_050680029.1 pyrimidine 5'-nucleotidase -
  IFU33_RS16570 (IFU33_16570) rimI 3498810..3499250 (-) 441 WP_010253603.1 ribosomal protein S18-alanine N-acetyltransferase -
  IFU33_RS16575 (IFU33_16575) - 3499222..3499632 (-) 411 WP_064690538.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49321.96 Da        Isoelectric Point: 7.4220

>NTDB_id=929018 IFU33_RS16550 WP_010253610.1 3494315..3495697(-) (radA) [Pantoea agglomerans strain CFBP13600]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=929018 IFU33_RS16550 WP_010253610.1 3494315..3495697(-) (radA) [Pantoea agglomerans strain CFBP13600]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGTT
ATGCCGGCAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCTACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGTTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTTAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCAGTATTGCACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTCAAAGTCACTGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424