Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AB3239_RS00330 Genome accession   NZ_CP166831
Coordinates   59657..59887 (+) Length   76 a.a.
NCBI ID   WP_370957126.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54657..64887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS00300 (AB3239_00300) ridA 54821..55198 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  AB3239_RS00305 (AB3239_00305) spoVG 55393..55686 (+) 294 WP_003218346.1 septation regulator SpoVG -
  AB3239_RS00310 (AB3239_00310) glmU 55879..57249 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AB3239_RS00315 (AB3239_00315) prsS 57272..58225 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  AB3239_RS00320 (AB3239_00320) rplYB 58310..58924 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AB3239_RS00325 (AB3239_00325) pth 59031..59597 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  AB3239_RS00330 (AB3239_00330) subA/fin 59657..59887 (+) 231 WP_370957126.1 anti-sigma-F factor Fin Machinery gene
  AB3239_RS00335 (AB3239_00335) mfd 59957..63490 (+) 3534 WP_120027700.1 transcription-repair coupling factor -
  AB3239_RS00340 (AB3239_00340) spoVT 63626..64162 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8833.78 Da        Isoelectric Point: 5.3895

>NTDB_id=929017 AB3239_RS00330 WP_370957126.1 59657..59887(+) (subA/fin) [Bacillus subtilis strain TE3T-UV25]
MALHYYCRHCGVKVGSVESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=929017 AB3239_RS00330 WP_370957126.1 59657..59887(+) (subA/fin) [Bacillus subtilis strain TE3T-UV25]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTGTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987