Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ACA344_RS26185 Genome accession   NZ_CP166823
Coordinates   5605141..5605698 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain D9203039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5600141..5610698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA344_RS26165 (ACA344_26165) pilR 5601417..5602754 (+) 1338 WP_003110427.1 two-component system response regulator PilR -
  ACA344_RS26170 (ACA344_26170) thiO 5602800..5603894 (-) 1095 WP_023096126.1 glycine oxidase ThiO -
  ACA344_RS26175 (ACA344_26175) - 5604029..5604538 (+) 510 WP_009316266.1 Tfp pilus assembly protein FimT/FimU -
  ACA344_RS26180 (ACA344_26180) - 5604644..5605150 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  ACA344_RS26185 (ACA344_26185) pilV 5605141..5605698 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  ACA344_RS26190 (ACA344_26190) pilW 5605695..5606519 (+) 825 WP_023096127.1 type 4a pilus minor pilin PilW -
  ACA344_RS26195 (ACA344_26195) pilX 5606516..5607103 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  ACA344_RS26200 (ACA344_26200) pilY1 5607115..5610606 (+) 3492 WP_023096128.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=928985 ACA344_RS26185 WP_003094697.1 5605141..5605698(+) (pilV) [Pseudomonas aeruginosa strain D9203039]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=928985 ACA344_RS26185 WP_003094697.1 5605141..5605698(+) (pilV) [Pseudomonas aeruginosa strain D9203039]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCAGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978