Detailed information NTG0928931

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACA344_RS07430
• Genome accession: NZ_CP166823
• Coordinates: 1599889..1600893 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain D9203039
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1594889..1605893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA344_RS07400 (ACA344_07400)	fghA	1594981..1595832 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
ACA344_RS07405 (ACA344_07405)	ispF	1595903..1596376 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACA344_RS07410 (ACA344_07410)	truD	1596373..1597440 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
ACA344_RS07415 (ACA344_07415)	surE	1597428..1598177 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACA344_RS07420 (ACA344_07420)	-	1598210..1598845 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACA344_RS07425 (ACA344_07425)	-	1598891..1599784 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACA344_RS07430 (ACA344_07430)	rpoS	1599889..1600893 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACA344_RS07435 (ACA344_07435)	fdxA	1601320..1601643 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACA344_RS07440 (ACA344_07440)	mutS	1601710..1604277 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
ACA344_RS07445 (ACA344_07445)	-	1604403..1605410 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=928931 ACA344_RS07430 WP_003113871.1 1599889..1600893(+) (rpoS) [Pseudomonas aeruginosa strain D9203039]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=928931 ACA344_RS07430 WP_003113871.1 1599889..1600893(+) (rpoS) [Pseudomonas aeruginosa strain D9203039]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653