Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACA343_RS28805 Genome accession   NZ_CP166821
Coordinates   6163305..6163901 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain J5083553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6158305..6168901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA343_RS28785 (ACA343_28785) aroK 6159436..6159954 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACA343_RS28790 (ACA343_28790) pilQ 6159966..6162110 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  ACA343_RS28795 (ACA343_28795) comL/pilP 6162164..6162688 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACA343_RS28800 (ACA343_28800) pilO 6162685..6163308 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACA343_RS28805 (ACA343_28805) pilN 6163305..6163901 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACA343_RS28810 (ACA343_28810) pilM 6163901..6164965 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACA343_RS28815 (ACA343_28815) - 6165150..6167621 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=928893 ACA343_RS28805 WP_003095839.1 6163305..6163901(-) (pilN) [Pseudomonas aeruginosa strain J5083553]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=928893 ACA343_RS28805 WP_003095839.1 6163305..6163901(-) (pilN) [Pseudomonas aeruginosa strain J5083553]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369