Detailed information NTG0928830

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACA343_RS07010
• Genome accession: NZ_CP166821
• Coordinates: 1498080..1499084 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain J5083553
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1493080..1504084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA343_RS06980 (ACA343_06980)	fghA	1493172..1494023 (+)	852	WP_019484567.1	S-formylglutathione hydrolase	-
ACA343_RS06985 (ACA343_06985)	ispF	1494094..1494567 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACA343_RS06990 (ACA343_06990)	truD	1494564..1495631 (+)	1068	WP_019484568.1	tRNA pseudouridine(13) synthase TruD	-
ACA343_RS06995 (ACA343_06995)	surE	1495619..1496368 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACA343_RS07000 (ACA343_07000)	-	1496401..1497036 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACA343_RS07005 (ACA343_07005)	-	1497082..1497975 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACA343_RS07010 (ACA343_07010)	rpoS	1498080..1499084 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACA343_RS07015 (ACA343_07015)	fdxA	1499511..1499834 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACA343_RS07020 (ACA343_07020)	mutS	1499901..1502468 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACA343_RS07025 (ACA343_07025)	-	1502594..1503601 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=928830 ACA343_RS07010 WP_003113871.1 1498080..1499084(+) (rpoS) [Pseudomonas aeruginosa strain J5083553]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=928830 ACA343_RS07010 WP_003113871.1 1498080..1499084(+) (rpoS) [Pseudomonas aeruginosa strain J5083553]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653