Detailed information NTG0928733

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACA345_RS07215
• Genome accession: NZ_CP166819
• Coordinates: 1539499..1540503 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain M6121663
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1534499..1545503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA345_RS07185 (ACA345_07185)	fghA	1534591..1535442 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
ACA345_RS07190 (ACA345_07190)	ispF	1535513..1535986 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACA345_RS07195 (ACA345_07195)	truD	1535983..1537050 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
ACA345_RS07200 (ACA345_07200)	surE	1537038..1537787 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACA345_RS07205 (ACA345_07205)	-	1537820..1538455 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACA345_RS07210 (ACA345_07210)	-	1538501..1539394 (+)	894	WP_033991080.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACA345_RS07215 (ACA345_07215)	rpoS	1539499..1540503 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACA345_RS07220 (ACA345_07220)	fdxA	1540930..1541253 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACA345_RS07225 (ACA345_07225)	mutS	1541320..1543887 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACA345_RS07230 (ACA345_07230)	-	1544013..1545020 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=928733 ACA345_RS07215 WP_003113871.1 1539499..1540503(+) (rpoS) [Pseudomonas aeruginosa strain M6121663]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=928733 ACA345_RS07215 WP_003113871.1 1539499..1540503(+) (rpoS) [Pseudomonas aeruginosa strain M6121663]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653