Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   R8493_RS07385 Genome accession   NZ_AP028341
Coordinates   1435545..1436141 (-) Length   198 a.a.
NCBI ID   WP_289871837.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10328     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430545..1441141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS07365 (B10328_14420) - 1431299..1432063 (+) 765 WP_002845135.1 TIGR02757 family protein -
  R8493_RS07370 (B10328_14430) - 1432067..1432831 (+) 765 WP_317647154.1 TSUP family transporter -
  R8493_RS07375 (B10328_14440) ctsF 1432828..1434003 (-) 1176 WP_317647155.1 type II secretion system F family protein Machinery gene
  R8493_RS07380 (B10328_14450) ctsE 1433990..1435552 (-) 1563 WP_221678917.1 GspE/PulE family protein Machinery gene
  R8493_RS07385 (B10328_14460) ctsX 1435545..1436141 (-) 597 WP_289871837.1 CDC27 family protein Machinery gene
  R8493_RS07390 (B10328_14470) ctsP 1436138..1436734 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8493_RS07395 (B10328_14480) ctsD 1436727..1438145 (-) 1419 WP_203544942.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8493_RS07400 (B10328_14490) ctsR 1438123..1438434 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23733.18 Da        Isoelectric Point: 5.2295

>NTDB_id=92872 R8493_RS07385 WP_289871837.1 1435545..1436141(-) (ctsX) [Campylobacter coli strain BCH-10328]
MSIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=92872 R8493_RS07385 WP_289871837.1 1435545..1436141(-) (ctsX) [Campylobacter coli strain BCH-10328]
ATGAGTATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGTTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment