Detailed information NTG0928635

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SA496_RS02400
• Genome accession: NZ_CP143312
• Coordinates: 481763..482635 (-)
• Length: 290 a.a.
• NCBI ID: WP_330115004.1
• Uniprot ID: -
• Organism: Pseudomonas sp. JS3066
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 476763..487635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA496_RS02360 (SA496_02360)	-	477739..477912 (-)	174	WP_120652969.1	DUF3094 family protein	-
SA496_RS02365 (SA496_02365)	-	478001..478627 (-)	627	WP_120652968.1	DUF1780 domain-containing protein	-
SA496_RS02370 (SA496_02370)	-	478763..479185 (+)	423	WP_120652967.1	GNAT family N-acetyltransferase	-
SA496_RS02375 (SA496_02375)	-	479190..479657 (+)	468	WP_153921520.1	FAD/FMN-containing dehydrogenase	-
SA496_RS02380 (SA496_02380)	-	479654..480343 (+)	690	WP_330115002.1	energy-coupling factor ABC transporter permease	-
SA496_RS02385 (SA496_02385)	-	480622..480837 (+)	216	WP_330115003.1	hypothetical protein	-
SA496_RS02390 (SA496_02390)	yacG	480958..481158 (-)	201	WP_120652963.1	DNA gyrase inhibitor YacG	-
SA496_RS02395 (SA496_02395)	coaE	481155..481766 (-)	612	WP_120652962.1	dephospho-CoA kinase	-
SA496_RS02400 (SA496_02400)	pilD	481763..482635 (-)	873	WP_330115004.1	A24 family peptidase	Machinery gene
SA496_RS02405 (SA496_02405)	pilC	482639..483856 (-)	1218	WP_330115005.1	type II secretion system F family protein	Machinery gene
SA496_RS02410 (SA496_02410)	pilB	483859..485565 (-)	1707	WP_330115006.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SA496_RS02415 (SA496_02415)	-	485683..486135 (-)	453	WP_330115007.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
SA496_RS02425 (SA496_02425)	-	486584..486811 (-)	228	WP_330115008.1	hypothetical protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31952.95 Da
• Isoelectric Point: 7.0816

>NTDB_id=928635 SA496_RS02400 WP_330115004.1 481763..482635(-) (pilD) [Pseudomonas sp. JS3066]
MQLIDFLASHALAFVLSVLLLGLLVGSFLNVVIHRLPAMMMRDWQEQAREALSLPAEPKGPVFNLILPNSRCPHCSHEIR
AWENIPVVSYLALGGKCSSCKAPISKRYPLVELFCGVLSAYVAWHFGFSWQTGTFLVLTWGLLAMSMIDVDHQLLPDVLV
LPLLWLGLILNSQGLFASLEDALWGAVAGYMSLWSVYWVFKLVTGKEGMGHGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMLRLRNQDTATPIPFGPYLAIAGWIALLWGDQITATYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=928635 SA496_RS02400 WP_330115004.1 481763..482635(-) (pilD) [Pseudomonas sp. JS3066]
ATGCAGTTGATCGATTTTCTGGCCAGCCACGCGCTGGCCTTTGTTTTATCCGTGCTCCTGCTTGGCTTGCTGGTAGGCAG
TTTCCTCAACGTTGTGATCCACCGCCTGCCTGCGATGATGATGCGCGACTGGCAGGAGCAGGCCCGTGAAGCGCTGAGTC
TGCCGGCTGAGCCGAAAGGCCCGGTGTTCAATCTCATTCTTCCGAACTCCCGCTGCCCCCATTGCAGCCATGAGATTCGC
GCCTGGGAGAACATCCCGGTGGTGAGCTACTTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCCCCATCAGCAAGCG
CTATCCCTTGGTTGAGCTATTTTGCGGCGTGCTGTCTGCCTATGTGGCATGGCATTTCGGATTCAGCTGGCAGACCGGAA
CTTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGCTGTTGCCGGACGTGCTGGTC
CTGCCTCTGCTCTGGCTTGGCCTCATCCTCAACAGCCAGGGCCTGTTCGCCAGCCTGGAAGACGCGCTCTGGGGAGCGGT
TGCCGGCTACATGAGCCTGTGGTCGGTTTACTGGGTGTTCAAGCTGGTGACTGGCAAGGAAGGTATGGGCCACGGCGACT
TCAAGTTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGGTACTGCCGCTGACTATCCTGCTGTCATCCCTCGTGGGT
GCGGTGCTGGGTGTGATCATGCTGCGTCTGCGCAACCAGGACACGGCAACCCCTATCCCCTTCGGTCCGTACCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACGGCGACCTATCTGCAATTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.815	93.103	0.51
pilD	Vibrio campbellii strain DS40M4	52.747	94.138	0.497
pilD	Acinetobacter baumannii D1279779	49.306	99.31	0.49
pilD	Acinetobacter nosocomialis M2	48.958	99.31	0.486
pilD	Neisseria gonorrhoeae MS11	52.874	90	0.476