Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACA342_RS02170 Genome accession   NZ_CP166817
Coordinates   466534..466899 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain M7242404     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461534..471899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA342_RS02140 (ACA342_02140) pyrR 462156..462668 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ACA342_RS02145 (ACA342_02145) ruvX 462780..463214 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ACA342_RS02150 (ACA342_02150) - 463214..463783 (-) 570 WP_033991523.1 YqgE/AlgH family protein -
  ACA342_RS02155 (ACA342_02155) - 463832..464725 (-) 894 WP_003084580.1 TonB family protein -
  ACA342_RS02160 (ACA342_02160) gshB 464872..465825 (-) 954 WP_003100943.1 glutathione synthase -
  ACA342_RS02165 (ACA342_02165) pilG 466080..466487 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ACA342_RS02170 (ACA342_02170) pilH 466534..466899 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ACA342_RS02175 (ACA342_02175) - 466950..467486 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ACA342_RS02180 (ACA342_02180) pilJ 467571..469619 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ACA342_RS02185 (ACA342_02185) pilK 469680..470555 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=928623 ACA342_RS02170 WP_003084587.1 466534..466899(+) (pilH) [Pseudomonas aeruginosa strain M7242404]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=928623 ACA342_RS02170 WP_003084587.1 466534..466899(+) (pilH) [Pseudomonas aeruginosa strain M7242404]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364