Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8493_RS05965 Genome accession   NZ_AP028341
Coordinates   1147633..1148127 (+) Length   164 a.a.
NCBI ID   WP_002825290.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10328     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142633..1153127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS05950 (B10328_11570) - 1144011..1145192 (-) 1182 WP_042963780.1 metal-dependent hydrolase -
  R8493_RS05955 (B10328_11580) - 1145201..1146100 (-) 900 WP_042963779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8493_RS05960 (B10328_11590) gatB 1146100..1147518 (-) 1419 WP_002825291.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8493_RS05965 (B10328_11600) luxS 1147633..1148127 (+) 495 WP_002825290.1 S-ribosylhomocysteine lyase Regulator
  R8493_RS05970 (B10328_11610) - 1148443..1149435 (+) 993 WP_025399099.1 isopenicillin N synthase family oxygenase -
  R8493_RS05975 (B10328_11620) - 1149449..1150219 (+) 771 WP_317647077.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8493_RS05980 (B10328_11630) metE 1150242..1152506 (+) 2265 WP_075478980.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18217.05 Da        Isoelectric Point: 5.9918

>NTDB_id=92857 R8493_RS05965 WP_002825290.1 1147633..1148127(+) (luxS) [Campylobacter coli strain BCH-10328]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDVLNVSDQNKIPELNIYQCGTCAMHSLNEAKEIAQKVLNSSIGVMNNGELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=92857 R8493_RS05965 WP_002825290.1 1147633..1148127(+) (luxS) [Campylobacter coli strain BCH-10328]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCTGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGCACAC
ATACCTTAGAGCACTTATTTGCGGGTTTTATGAGGGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGCTTAATTGGAACACCGGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATGTTTTAAATGTAAGCGATCAAAACAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCTATGC
ATTCCTTAAATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTAGTATAGGTGTGATGAATAATGGAGAATTAAAA
CTTGAAAATATTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment