Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V0I27_RS14225 Genome accession   NZ_CP143277
Coordinates   3172703..3174064 (-) Length   453 a.a.
NCBI ID   WP_003479244.1    Uniprot ID   A0A127ELS8
Organism   Clostridium perfringens strain SXD-8213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3167703..3179064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0I27_RS14205 (V0I27_14205) ispD 3169075..3169752 (-) 678 WP_061429466.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  V0I27_RS14210 (V0I27_14210) - 3169766..3170872 (-) 1107 WP_061429245.1 PIN/TRAM domain-containing protein -
  V0I27_RS14215 (V0I27_14215) - 3171184..3171585 (+) 402 WP_003459340.1 hypothetical protein -
  V0I27_RS14220 (V0I27_14220) disA 3171619..3172683 (-) 1065 WP_003452233.1 DNA integrity scanning diadenylate cyclase DisA -
  V0I27_RS14225 (V0I27_14225) radA 3172703..3174064 (-) 1362 WP_003479244.1 DNA repair protein RadA Machinery gene
  V0I27_RS14230 (V0I27_14230) nagB 3174316..3175044 (-) 729 WP_003472813.1 glucosamine-6-phosphate deaminase -
  V0I27_RS14235 (V0I27_14235) - 3175041..3175763 (-) 723 WP_011010906.1 GntR family transcriptional regulator -
  V0I27_RS14240 (V0I27_14240) - 3175963..3176127 (+) 165 WP_003459343.1 hypothetical protein -
  V0I27_RS14245 (V0I27_14245) - 3176221..3176448 (+) 228 WP_003452255.1 glutaredoxin family protein -
  V0I27_RS14250 (V0I27_14250) - 3176572..3178020 (-) 1449 WP_003459369.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  V0I27_RS14255 (V0I27_14255) - 3178037..3178270 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49820.54 Da        Isoelectric Point: 6.5314

>NTDB_id=928487 V0I27_RS14225 WP_003479244.1 3172703..3174064(-) (radA) [Clostridium perfringens strain SXD-8213]
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=928487 V0I27_RS14225 WP_003479244.1 3172703..3174064(-) (radA) [Clostridium perfringens strain SXD-8213]
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGGAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGGCTTGTTAAGGGGTCACTTACACTTATATCTGGTGATCCTGGAATAGGTAAATCTACACTTCTTTTACA
AACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ATGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTTGATACTGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTTTTAGAGGACACTAGTTTTAATCAAGAAGGGTCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAAAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCTATTT
CACTTGTATCCTCTGTTAAAGGTAAAGCAGCTAGCTTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127ELS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

100

0.501
  radA Streptococcus pneumoniae Rx1

47.577

100

0.477
  radA Streptococcus pneumoniae D39

47.577

100

0.477
  radA Streptococcus pneumoniae R6

47.577

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.477
  radA Streptococcus mitis SK321

47.357

100

0.475
  radA Streptococcus mitis NCTC 12261

47.357

100

0.475