Detailed information NTG0928447

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: VT264_RS18305
• Genome accession: NZ_CP143266
• Coordinates: 3691903..3693048 (+)
• Length: 381 a.a.
• NCBI ID: WP_024085922.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JBCS608
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3686903..3698048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VT264_RS18285 (VT264_18285)	-	3687378..3688094 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
VT264_RS18290 (VT264_18290)	narK	3688192..3689382 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
VT264_RS18295 (VT264_18295)	argS	3689516..3691186 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
VT264_RS18300 (VT264_18300)	-	3691183..3691611 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
VT264_RS18305 (VT264_18305)	rapF	3691903..3693048 (+)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
VT264_RS18310 (VT264_18310)	-	3693032..3693151 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
VT264_RS18315 (VT264_18315)	speB	3693274..3693711 (-)	438	Protein_3555	agmatinase	-
VT264_RS18320 (VT264_18320)	-	3693873..3695300 (-)	1428	WP_046341451.1	DUF885 family protein	-
VT264_RS18325 (VT264_18325)	-	3695301..3696641 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
VT264_RS18330 (VT264_18330)	-	3696638..3697693 (-)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45768.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=928447 VT264_RS18305 WP_024085922.1 3691903..3693048(+) (rapF) [Bacillus velezensis strain JBCS608]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=928447 VT264_RS18305 WP_024085922.1 3691903..3693048(+) (rapF) [Bacillus velezensis strain JBCS608]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533