Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   VT264_RS14880 Genome accession   NZ_CP143266
Coordinates   3051653..3051793 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain JBCS608     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046653..3056793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT264_RS14855 (VT264_14855) - 3046993..3047376 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  VT264_RS14860 (VT264_14860) comA 3047398..3048042 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  VT264_RS14865 (VT264_14865) comP 3048123..3050414 (-) 2292 WP_083058699.1 histidine kinase Regulator
  VT264_RS14870 (VT264_14870) comX 3050426..3050590 (-) 165 WP_007613432.1 competence pheromone ComX -
  VT264_RS14875 (VT264_14875) - 3050590..3051501 (-) 912 WP_014305720.1 polyprenyl synthetase family protein -
  VT264_RS14880 (VT264_14880) degQ 3051653..3051793 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  VT264_RS14885 (VT264_14885) - 3052259..3052600 (+) 342 WP_014305721.1 hypothetical protein -
  VT264_RS14890 (VT264_14890) - 3052607..3053827 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  VT264_RS14895 (VT264_14895) - 3053957..3055423 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  VT264_RS14900 (VT264_14900) - 3055441..3055992 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  VT264_RS14905 (VT264_14905) - 3056089..3056487 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=928437 VT264_RS14880 WP_003152043.1 3051653..3051793(-) (degQ) [Bacillus velezensis strain JBCS608]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=928437 VT264_RS14880 WP_003152043.1 3051653..3051793(-) (degQ) [Bacillus velezensis strain JBCS608]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891