Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8493_RS02960 Genome accession   NZ_AP028341
Coordinates   584726..585106 (+) Length   126 a.a.
NCBI ID   WP_002792200.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10328     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579726..590106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS02940 (B10328_05730) - 579852..581786 (-) 1935 WP_317647284.1 ribonuclease R family protein -
  R8493_RS02945 (B10328_05740) ilvC 581909..582931 (+) 1023 WP_002825340.1 ketol-acid reductoisomerase -
  R8493_RS02950 (B10328_05750) - 582935..583969 (+) 1035 WP_289872351.1 divergent polysaccharide deacetylase family protein -
  R8493_RS02955 (B10328_05760) dprA 583959..584729 (+) 771 WP_052779041.1 DNA-processing protein DprA Machinery gene
  R8493_RS02960 (B10328_05770) dprB 584726..585106 (+) 381 WP_002792200.1 Holliday junction resolvase RuvX Machinery gene
  R8493_RS02965 (B10328_05780) - 585117..585971 (+) 855 WP_370658866.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8493_RS02970 (B10328_05790) msrA 586194..586694 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8493_RS02975 (B10328_05800) ppa 586742..587260 (-) 519 WP_002776378.1 inorganic diphosphatase -
  R8493_RS02980 (B10328_05810) - 587271..587846 (-) 576 WP_317647286.1 adenylate kinase -
  R8493_RS02985 (B10328_05820) aspS 587843..589594 (-) 1752 WP_317647287.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13922.31 Da        Isoelectric Point: 8.9633

>NTDB_id=92843 R8493_RS02960 WP_002792200.1 584726..585106(+) (dprB) [Campylobacter coli strain BCH-10328]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRTNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=92843 R8493_RS02960 WP_002792200.1 584726..585106(+) (dprB) [Campylobacter coli strain BCH-10328]
ATGAGAGCTTTGGCTTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATCGATAAAATCGCCATTCCTTTAGA
GGGTATAATCAGAACAAATCGCAATCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCCAAAGGAGGTTCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421