Detailed information NTG0928384

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: VT264_RS01975
• Genome accession: NZ_CP143266
• Coordinates: 417474..418622 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JBCS608
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 412474..423622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VT264_RS01955 (VT264_01955)	-	412871..413554 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
VT264_RS01960 (VT264_01960)	-	413569..415005 (-)	1437	WP_024084884.1	ABC transporter permease	-
VT264_RS01965 (VT264_01965)	-	415218..415901 (+)	684	WP_024084885.1	response regulator transcription factor	-
VT264_RS01970 (VT264_01970)	-	415888..417321 (+)	1434	WP_161625271.1	sensor histidine kinase	-
VT264_RS01975 (VT264_01975)	rapC	417474..418622 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
VT264_RS01980 (VT264_01980)	phrC	418606..418725 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
VT264_RS01985 (VT264_01985)	-	418875..418985 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
VT264_RS01990 (VT264_01990)	-	419065..420429 (-)	1365	WP_003156333.1	aspartate kinase	-
VT264_RS01995 (VT264_01995)	ceuB	420844..421797 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
VT264_RS02000 (VT264_02000)	-	421787..422734 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
VT264_RS02005 (VT264_02005)	-	422728..423486 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=928384 VT264_RS01975 WP_003156336.1 417474..418622(+) (rapC) [Bacillus velezensis strain JBCS608]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=928384 VT264_RS01975 WP_003156336.1 417474..418622(+) (rapC) [Bacillus velezensis strain JBCS608]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568