Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VT264_RS01785 Genome accession   NZ_CP143266
Coordinates   359620..360057 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain JBCS608     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 354620..365057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT264_RS01750 (VT264_01750) - 355200..355325 (-) 126 Protein_304 hypothetical protein -
  VT264_RS01755 (VT264_01755) - 355478..356680 (+) 1203 WP_024084872.1 GTP-binding protein -
  VT264_RS01760 (VT264_01760) - 356745..357881 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  VT264_RS01765 (VT264_01765) - 357896..358330 (+) 435 WP_021494203.1 RDD family protein -
  VT264_RS01770 (VT264_01770) - 358447..358722 (+) 276 WP_369719109.1 YckD family protein -
  VT264_RS20040 - 358826..358909 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  VT264_RS01775 (VT264_01775) - 358941..359159 (+) 219 Protein_310 family 1 glycosylhydrolase -
  VT264_RS01780 (VT264_01780) nin/comJ 359200..359598 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  VT264_RS01785 (VT264_01785) nucA/comI 359620..360057 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VT264_RS01790 (VT264_01790) hxlB 360416..360973 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  VT264_RS01795 (VT264_01795) hxlA 360970..361605 (-) 636 WP_024084873.1 3-hexulose-6-phosphate synthase -
  VT264_RS01800 (VT264_01800) - 361837..362199 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=928383 VT264_RS01785 WP_003156588.1 359620..360057(-) (nucA/comI) [Bacillus velezensis strain JBCS608]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=928383 VT264_RS01785 WP_003156588.1 359620..360057(-) (nucA/comI) [Bacillus velezensis strain JBCS608]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641