Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VIN14_RS01015 Genome accession   NZ_CP143264
Coordinates   205984..207783 (-) Length   599 a.a.
NCBI ID   WP_039639682.1    Uniprot ID   -
Organism   Lacticaseibacillus casei strain LC130     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 200984..212783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIN14_RS00990 (VIN14_00990) - 202249..202593 (+) 345 WP_025013473.1 hypothetical protein -
  VIN14_RS00995 (VIN14_00995) - 202667..203386 (+) 720 WP_039639686.1 ATP-binding cassette domain-containing protein -
  VIN14_RS01000 (VIN14_01000) - 203383..204180 (+) 798 WP_010489770.1 metal ABC transporter permease -
  VIN14_RS01005 (VIN14_01005) - 204261..205109 (-) 849 WP_025013474.1 metallophosphoesterase family protein -
  VIN14_RS01010 (VIN14_01010) - 205106..205987 (-) 882 WP_039639684.1 NAD(P)-dependent oxidoreductase -
  VIN14_RS01015 (VIN14_01015) pepF 205984..207783 (-) 1800 WP_039639682.1 oligoendopeptidase F Regulator
  VIN14_RS01020 (VIN14_01020) - 207912..209006 (+) 1095 WP_039639680.1 LCP family protein -
  VIN14_RS01025 (VIN14_01025) - 209185..209979 (-) 795 Protein_204 branched-chain amino acid transport system II carrier protein -
  VIN14_RS01030 (VIN14_01030) - 210066..211118 (-) 1053 WP_010620018.1 IS30 family transposase -
  VIN14_RS01035 (VIN14_01035) - 211242..211838 (-) 597 Protein_206 branched-chain amino acid transport system II carrier protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67117.18 Da        Isoelectric Point: 5.7584

>NTDB_id=928352 VIN14_RS01015 WP_039639682.1 205984..207783(-) (pepF) [Lacticaseibacillus casei strain LC130]
MQHLPVREDVPTKLTWDLTTIYPNDAAWTADFGAVREQAKEATALKGTLGNSAAALINGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPADKLAAWRDTESLKPFGHFIDAITVNRQHVLTAAAEALIAS
AGNALNASHATFNVLDNSDLQFGFVENEDGETVQLSNGLYGQLIRSTQRKLRKEAFETLLRAYESMKNTFAQTLSGQVKA
HNFNAKAHHYANARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLGVDQLHMYDIYTPLTGKPPLTFTLDQA
KAEALKALAPLGDDYLSHVREIFDNRYIDVVENKGKRSGAYSGGSYDTNPFILLNWHDAVDELYTLIHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHTDDPKVRAYILNYYLDGFKGTVFRQTQFTEFEHWIHQQDQQGEPLTA
TSMATYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPNAASRYLDYLKSGSSQY
AIDTMKTAGVDMTKPDYLEAAFSMFEKRLTELEELLQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=928352 VIN14_RS01015 WP_039639682.1 205984..207783(-) (pepF) [Lacticaseibacillus casei strain LC130]
ATGCAACATTTACCGGTACGTGAAGATGTTCCAACCAAGCTGACATGGGATCTAACCACCATTTATCCAAATGATGCGGC
GTGGACAGCCGACTTTGGAGCTGTTCGCGAGCAGGCCAAAGAGGCGACTGCGCTCAAGGGAACGTTAGGCAATTCAGCCG
CTGCGCTCATCAACGGCATCAAGGCGGTTTTAGCGGTCTTTCGGCGGTTTGAGAAAGTTTATGTTTATTCAAGTCTGAAA
AGCGACCAGGATACTGGCAACGCCACTTATCAGGCGATGAATGCCAAGGCTGAAAGTCTCGGCGCCGAGCTGGCCAGTCA
GTTAGCCTTTTTGGATCCGGAGATTCTGGCAATTCCCGCGGACAAATTGGCAGCATGGCGCGACACTGAAAGTCTTAAGC
CGTTTGGGCATTTTATCGATGCGATCACCGTCAATCGCCAACATGTGCTGACAGCCGCAGCGGAAGCTCTGATTGCCAGT
GCCGGTAATGCGCTGAACGCCAGTCATGCCACTTTCAACGTCCTAGACAACTCCGACCTGCAATTCGGTTTTGTCGAAAA
TGAAGACGGCGAAACAGTGCAGCTCAGTAACGGCTTGTACGGCCAGCTGATTCGCTCAACCCAGCGAAAATTGCGCAAAG
AAGCCTTTGAAACGTTACTGCGTGCTTACGAAAGCATGAAGAACACGTTTGCCCAAACCCTGAGCGGCCAGGTCAAGGCG
CACAATTTCAATGCCAAAGCCCATCATTACGCTAATGCCCGCGCGGCGGCAATGGCAAGCAACCACATTCCGGAAAGTGT
TTATACGACCCTTATCGATCAAGTCAACACCCATTTACCCCTTCTGCATCGCTATGTCGCATTGCGGAAAAAAGTCTTGG
GCGTCGATCAACTACACATGTATGACATTTACACCCCGTTGACTGGCAAGCCGCCGTTGACGTTCACGCTTGATCAGGCA
AAAGCCGAGGCATTAAAGGCTTTGGCGCCGCTTGGTGATGATTATCTCAGCCATGTCCGGGAAATCTTCGACAATCGTTA
CATTGATGTCGTCGAAAATAAAGGCAAACGCTCCGGTGCTTATTCAGGCGGGTCTTACGATACGAATCCGTTTATTTTGC
TGAACTGGCATGACGCGGTGGATGAGCTTTATACTTTGATTCACGAAACCGGCCACAGCGTTCACAGCTGGTACACGCGT
CACAACCAGCCTTATGTGTATGGGGACTATCCGATTTTTGTTGCCGAAATTGCTTCGACTACCAACGAAAATCTGCTCAC
CGATTACTTCCTCACCCACACGGATGACCCCAAGGTACGCGCCTACATCCTGAATTACTATCTCGATGGCTTCAAAGGCA
CTGTTTTTCGCCAAACCCAATTTACCGAATTTGAGCACTGGATTCATCAGCAGGACCAACAAGGCGAACCGCTCACGGCA
ACTAGTATGGCGACTTACTATGCCGATCTCAATGCCCGGTATTATGGACCGGATGTTGCCCGCGATCCCGAAATTGCATT
CGAATGGGCACGAATTCCACATTTCTATTACAATTATTATGTCTATCAGTATGCAACCGGATTTGCCGCAGCATCAACGC
TAGCCGCTGGTATTAGCAGCGGCGAACCCAACGCCGCATCCCGCTACTTGGACTATTTAAAGTCAGGTAGCTCGCAATAC
GCCATCGATACCATGAAAACCGCTGGTGTCGATATGACCAAACCGGACTATCTGGAAGCGGCATTTTCGATGTTTGAAAA
GCGTTTAACGGAATTGGAAGAACTTTTACAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.357

99.165

0.519